Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00164 ATGGCTTCGGCCTTGGCTCGGTTTTATTCGTATCTACTAATCTATTTCTTGATTGGATTCAATCTCGCCGCTGTGATTTTCTCAGCCTCTGATGTCTCTTCAAGTTCCGATCATCGACGGCGGCCGATGATTCTTCCTCTCTATCTCTCGCCGCCTAACTCTACTCGCCACTTACGCGTATTGGACGGTGATCGTCGTCTCCGACATCTTCAGACGTTGGGACGGCCGAACACGCATACCGCTCGCATGAGGCTGCACGACGACCTACTTACCAACGGTTATTATACCACGCGGTTGTGGATTGGGACGCCTCCGCAGCAGTTCGCGCTAATTGTTGATACGGGGAGTACTGTGACGTACGTTCCGTGCTCTGACTGTAAACAGTGTGGGAAGCATCAGGACCCAAGATTTCAACCAGAATTGTCAACCACCTACAAACCTGTAAAGTGCAATATCAACTGTAATTGTGATGATAAAGGAATTCAATGTATTTATGAAAGACGGTATGCTGAAATGAGCACTAGCAGTGGTGTTCTAGCCGATGACATCATTTCATTTGGCAATGAAAGTGAACTTGTACCCCAGCGTGCTATCTTTGGTTGTGAAAACGTTGAAACTGGCGATATTTACAGCCAACGTGCCGACGGGATAATGGGTTTAGGCCGTGGCCCACTTAGTGTGATGGATCAACTTGTCAATAAAGGTGTTATTAGTAATTCCTTCTCTTTATGTTATGGTGGGATGGATGTTGGTGGTGGTACAATGGTTCTTGGCGGGATCCCTCCTCCCCCTGGCATGGTATTTACTCATTCAGACCCTTCTCGAAGTCCATATTATAATATAGAGCTGAGGGAAGTACATGTTGCTGGGAAGCCATTGAATGTACATCCTGCCGTCTTCAATGGGAAGTATGGCACCGTGTTGGATAGTGGGACTACATATGCATATTTTCCAGAACCAGCATTTGATGCATTTAAACATTCTATAATGAAAAAGATTAGTTTTCTGAAACAAATACCTGGTCCTGATCCAAGTTTTGATGATATCTGTTTTGCTGGAGCTGGAAGGAATGTCAATCAGCTAAAGGCTGTTTTTCCAGAGGTTGATATGGTATTTAACAATGGACAAAAATATTCTCTATTTCCAGAAAACTACTTGTTCCGGCATACTAAGGTTAGTGGTGCGTATTGCCTGGGGATTTTCAAAAATGCAAATGACCATACAACTCTTTTGGGAGGTATAATTGTTCGTAACACCTTAGTGACCTATGACAGAGAGAATACTAAGGTTGGATTTTGGAAAACCAATTGTTCTGAGCTATGGAAGACTCTCAATCATCCAACAGCTGTCCCAAACCCTTCACCAAAGATTGATCAAAATACTACAGGAAGTCTTCCATTGTCTCCAAGCGAACTGCCCAATACTTTATTTTCAGGGGAATTTCAGGTTGGACTTATTACGTTTGATATGGTACTTCGAGTCAATAGCTTCATTATGAAGCCTAACTTCACCGAACTAACTGAATTTATTGCACAATCGCTTGATGTCAATATCTCACAGGTTCGATTATTGAACTTTGCTTCTAAGGGAAACGAATCTGTTCTAAGATGGGGCATCTTCCCTGCTAAATCTGCTGATTACATTTCTAATACCACTGCAACGAGCATAATCATTCGCTTGAAGGAGCATAGAATGCAGCTCCCAGAAAAGTTTGGAGGTTATCAGTTGGTTGAATTGGATATTGAGCCTCAAGTAGAGAAGAGCTGGTGGGAGCAGCACGTATGGGGAGTGACTGTTGGAGTGGCAGTAAGCTTGGTTCTTGGATTGTTAAGTTCAGGTACGTGGTTGACTTGGAGATACATTCAGCGAAGGAGGTTGGTTTCATATGAGCCTGTGGGTGGCATCGTTCCAGAGCAAGAGCTTCAACCACTGTAG 1935 43.67 MASALARFYSYLLIYFLIGFNLAAVIFSASDVSSSSDHRRRPMILPLYLSPPNSTRHLRVLDGDRRLRHLQTLGRPNTHTARMRLHDDLLTNGYYTTRLWIGTPPQQFALIVDTGSTVTYVPCSDCKQCGKHQDPRFQPELSTTYKPVKCNINCNCDDKGIQCIYERRYAEMSTSSGVLADDIISFGNESELVPQRAIFGCENVETGDIYSQRADGIMGLGRGPLSVMDQLVNKGVISNSFSLCYGGMDVGGGTMVLGGIPPPPGMVFTHSDPSRSPYYNIELREVHVAGKPLNVHPAVFNGKYGTVLDSGTTYAYFPEPAFDAFKHSIMKKISFLKQIPGPDPSFDDICFAGAGRNVNQLKAVFPEVDMVFNNGQKYSLFPENYLFRHTKVSGAYCLGIFKNANDHTTLLGGIIVRNTLVTYDRENTKVGFWKTNCSELWKTLNHPTAVPNPSPKIDQNTTGSLPLSPSELPNTLFSGEFQVGLITFDMVLRVNSFIMKPNFTELTEFIAQSLDVNISQVRLLNFASKGNESVLRWGIFPAKSADYISNTTATSIIIRLKEHRMQLPEKFGGYQLVELDIEPQVEKSWWEQHVWGVTVGVAVSLVLGLLSSGTWLTWRYIQRRRLVSYEPVGGIVPEQELQPL 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1065495 1070590 - Bpe014882.1 Bpe04g00164 101973

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00164 644 PRINTS Pepsin (A1) aspartic protease family signature 306 317 IPR001461 GO:0004190|GO:0006508
Bpe04g00164 644 PRINTS Pepsin (A1) aspartic protease family signature 101 121 IPR001461 GO:0004190|GO:0006508
Bpe04g00164 644 PRINTS Pepsin (A1) aspartic protease family signature 409 424 IPR001461 GO:0004190|GO:0006508
Bpe04g00164 644 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 24 483 - -
Bpe04g00164 644 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 110 121 IPR001969 GO:0004190|GO:0006508
Bpe04g00164 644 Gene3D Acid Proteases 76 258 IPR021109 -
Bpe04g00164 644 Pfam Xylanase inhibitor N-terminal 95 259 IPR032861 -
Bpe04g00164 644 SUPERFAMILY Acid proteases 91 442 IPR021109 -
Bpe04g00164 644 Pfam Xylanase inhibitor C-terminal 279 432 IPR032799 -
Bpe04g00164 644 PANTHER ASPARTYL PROTEASES 24 483 IPR001461 GO:0004190|GO:0006508
Bpe04g00164 644 ProSiteProfiles Peptidase family A1 domain profile. 95 433 IPR033121 -
Bpe04g00164 644 CDD pepsin_A_like_plant 94 437 IPR034161 -
Bpe04g00164 644 Gene3D Acid Proteases 266 443 IPR021109 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00164 - - - cmos:111442809 900.582
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00164 Bpe-Chr4:1065495 Bpe13g00113 Bpe-Chr13:7305217 0 dispersed
Bpe04g00164 Bpe-Chr4:1065495 Bpe08g00186 Bpe-Chr8:1023363 1.27E-53 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g246 Blo01g01299 . . . . Bpe04g00164 . . Cmo04g02485 . . Cma09g00782 . . Sed03g0772 Cpe06g00616 . Bhi04g01897 Tan11g1261 Cmetu03g0048 . . . Lcy10g1235 Cla08g00605 Cam08g1018 Cec08g0608 Cco08g0719 Clacu08g0729 . Cre08g0537 Cone4ag1418 Cone7ag1520 . . Lsi04g02403 Csa04g01787 . Cme03g00531 . . . . . . . . Sed01g0005 . Cmo09g00773 . . Car04g02299 Car09g00691 Cpe01g02060 . Bhi09g02697 Tan01g4045 Cmetu07g0745 . Hepe01g2297 Mch11g0842 . Cla11g01544 Cam11g1608 Cec11g1636 Cco11g1638 Clacu11g1766 Cmu11g1582 Cre11g1999 Lsi08g00444 . Chy07g00625 Cme07g00832
Vvi18g682 . Blo12g00980 . Bda03g00191 . Bpe04g00164 . . . . . Cma09g00272 . . . . . . . . . . . . . . . . . . . . . Cone17ag0871 Cone20ag0219 . Csa04g02461 . . . . . . . . . . . . Cmo09g00268 . . . Car09g00227 . . Bhi09g03250 . . . Hepe01g1811 Mch11g0344 . Cla05g02090 . . . . . . . . Chy07g00175 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002183 1 4 2 1 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 1 3 2 2 2 2 1 2 2 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00164 Bpe_Chr04 FPKM 1374.765137 1406.165039 209.373795 204.158508 127.978577 120.136917 117.28772 190.750839 199.066986 191.065445