Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00168 ATCATGGGTGCTAATTTTGTACTCTTCTTTCTTTTGATGGGATGGAGCCTCTGCATTCCAATGGCGGCATCTGTATCTGGTTTGAATCAGCTCTCCTCTCTCTCTGTGGAGAAGCAAGATGACATTCTGGTTTCACCTAGCGGAGTTTTCACGGCTGGCTTCTTTGCCGTTGGTGAAAATGCATTTTGCTTCTCCATTTGGTTCAGTGAACCAGAAAACAATCAAAGTCGAGCCATTGTTTGGATGGCCAACCGTGACCAACCAGTCAATGGTAAGCACTCAAAGCTTTCGATCCTCAAAACTGGGAATGTTATCCTCACCGATGCTGATAAATTTGTTGTTTGGGAGACAAACACAGCCTCAGTGTCCTCCTTACAGTTATACCTCCATGACTCCGGCAATCTGGTTCTTGCTTCAGAGGGAGATAATCTCTGGCAAAGCTTTGATTCGCCAACAGACACCCTTTTACCCCTTCAACTTCTAACTAAATACACGCAGCTTGTTTCCTCAAGAAGCAAGAGCAACTATTCATCTGGGCTGTACAAGTTCTTCTTCGACAACGATAACACCCTCCGCCTCATCTTCGACACCCCGGCCATTTCCAGTGTGTATTGGTATGACCCTTGGCTTATAAGTTGGGAGGCCGCCAGATCTACTTATAACAACAGTAGAATTGCAACGCTTAATTCGTTGGGCAATTTCAGCTCCTCAGATGACTTGACGTTCAGGACTGCCGATTATGGAGCGAAGAATCAGAGAAGGTTGAGGATGGATCTTGATGGAAATATTCGAGTCTACAGCCGGGAAAAGGCCGGCCAGGAGTGGGTCGTGTCTTGGCAAGCCATTCAAGAACCCTGTAAAATCCATGGCATTTGTGGGGCCAATAGTATCTGCACATACGTTCCCAGTTATGGCAGAAAATGCTCTTGCATTGTCGAACATAAGATGAAAGATGTTACAGACTGGTCTTTGGGGTGTGAACCGCAATTCAATCTGTCGTGCAAGAAGGACGACGGATTTGTTGTAGTCTCGCGGGCCGAATTCTATGGCTATGATTACGGATTCTTCCCCAATTACACTTTGCAGCAGTGTAAGGATCTGTGTCTTCGTCTCTGTGAATGTATAGGTTTCCAGTTGCGTTATGGTAATGGTGTTTTTAATTGTTACCCAAAAACAATTATGCTAAATGGGTATCAGTCTCCTTCTTACGGAGGGGACTTTTACCTGAGGCTGCCAAAATCTAAATTGTTCTCCTACAAGCAGCCGGTAGATGAGTTTCAGTCTCAATGCCCCGAAATTATGGAGCTCCAGCGAACATACATCAAAAACCAGGAAAACGAGAAGGTGAAAACAATTTTATGGTTCGCCTCCGGCCTAGGAGGGATTGAACTGATCTGTGTAATATTCGTCTGGTGTTTTTTGATTAGAACCCAAAAGAACTCGAACCTAGAAACGCAAGGCTACGTTTTCGCGGCAACGGGATTCAAACGGTTTAGCTACGCCGAACTGAAAAAGGCAACGGGGGATTTCAGCGAGGAAATAGGAAGGGGCGCCGGAGGCGTTGTGTACAAAGCTACACTCCCTGATCTTCGAGTGGCGGCGGTGAAGAGGCTGGCGGAGGCTACGCGAGGAGAAGCAGAGTTTCTCGCGGAAGCAAGCATCATCGGTAGGCTTAACCATATGTACTTGATAGAAATGTGGGGCTACTGCGCCGAGGGAAAACACAGGCTTCTCGTCTACGAATATATGGAGCATGGGTCATTGGCCAAGAACCTTTCTTCCAAAACGCTTGATTGTAGGAAGAGATTTCAAATTGCTGTAGGAACAGCAAAAGGGTTGGCTTATTTACACGAAGAGTGCCTAGAATGGGTTCTCCACTGCGACGTCAAGCCTGAAAATATTCTTCTGGATTCAAATTATTCCCCAAAAGTTGCAGACTTCGGGCTGTCTAAGCTCTTAGACAGAGGGCAGCTTCCAGACTCGGGTTTCTCGCGGGCGAGAGGAACGAGAGGTTATATGGCTCCTGAATGGGTTTATAACCTGCCAATCACGTCGAAAGTGGATGTTTATAGTTATGGGATTGTTGTGTTGGAGTTGGTGACCGGAAAGAGCCCAATGGAGTGTGTCCAGGCTGGCGATAGTGTCGGGGAGAGAGAGCACAGAAGGATGGTGACGTGGATGAGAGGAAAAACCAACGACGGGGATGACGTGGCTTCGTGGATGTTAGAGATCGTTGACCCTTCACTGCGTGGAGATTATGATGGGGGAAAGATGGAAACTTTGGTTAAAGTTGGTCTTAAATGTTTGAGGGAAGATAGAAATGAGAGACCTACCATGGGTCAAGTAGTGGAAATGCTCCTCGCCCATGAACATGAGAATGTTTAG 2385 46.67 IMGANFVLFFLLMGWSLCIPMAASVSGLNQLSSLSVEKQDDILVSPSGVFTAGFFAVGENAFCFSIWFSEPENNQSRAIVWMANRDQPVNGKHSKLSILKTGNVILTDADKFVVWETNTASVSSLQLYLHDSGNLVLASEGDNLWQSFDSPTDTLLPLQLLTKYTQLVSSRSKSNYSSGLYKFFFDNDNTLRLIFDTPAISSVYWYDPWLISWEAARSTYNNSRIATLNSLGNFSSSDDLTFRTADYGAKNQRRLRMDLDGNIRVYSREKAGQEWVVSWQAIQEPCKIHGICGANSICTYVPSYGRKCSCIVEHKMKDVTDWSLGCEPQFNLSCKKDDGFVVVSRAEFYGYDYGFFPNYTLQQCKDLCLRLCECIGFQLRYGNGVFNCYPKTIMLNGYQSPSYGGDFYLRLPKSKLFSYKQPVDEFQSQCPEIMELQRTYIKNQENEKVKTILWFASGLGGIELICVIFVWCFLIRTQKNSNLETQGYVFAATGFKRFSYAELKKATGDFSEEIGRGAGGVVYKATLPDLRVAAVKRLAEATRGEAEFLAEASIIGRLNHMYLIEMWGYCAEGKHRLLVYEYMEHGSLAKNLSSKTLDCRKRFQIAVGTAKGLAYLHEECLEWVLHCDVKPENILLDSNYSPKVADFGLSKLLDRGQLPDSGFSRARGTRGYMAPEWVYNLPITSKVDVYSYGIVVLELVTGKSPMECVQAGDSVGEREHRRMVTWMRGKTNDGDDVASWMLEIVDPSLRGDYDGGKMETLVKVGLKCLREDRNERPTMGQVVEMLLAHEHENV 794
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1092368 1094752 + Bpe014888.3 Bpe04g00168 101977

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00168 794 Gene3D Phosphorylase Kinase; domain 1 473 582 - -
Bpe04g00168 794 Pfam S-locus glycoprotein domain 240 311 IPR000858 GO:0048544
Bpe04g00168 794 SMART blect_4 34 151 IPR001480 -
Bpe04g00168 794 Pfam D-mannose binding lectin 79 161 IPR001480 -
Bpe04g00168 794 ProSitePatterns Protein kinases ATP-binding region signature. 514 536 IPR017441 GO:0005524
Bpe04g00168 794 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
Bpe04g00168 794 PANTHER RECEPTOR PROTEIN KINASE ZMPK1-RELATED 8 792 - -
Bpe04g00168 794 SUPERFAMILY Protein kinase-like (PK-like) 484 787 IPR011009 -
Bpe04g00168 794 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 168 IPR036426 -
Bpe04g00168 794 ProSiteProfiles Protein kinase domain profile. 508 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe04g00168 794 PIRSF SRK 1 794 IPR024171 GO:0004674
Bpe04g00168 794 Gene3D - 26 149 IPR036426 -
Bpe04g00168 794 CDD B_lectin 43 151 IPR001480 -
Bpe04g00168 794 Pfam Protein kinase domain 511 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe04g00168 794 ProSiteProfiles Bulb-type lectin domain profile. 28 150 IPR001480 -
Bpe04g00168 794 Gene3D Transferase(Phosphotransferase) domain 1 583 794 - -
Bpe04g00168 794 SMART serkin_6 508 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe04g00168 794 ProSiteProfiles PAN/Apple domain profile. 334 412 IPR003609 -
Bpe04g00168 794 SMART ntp_6 335 411 IPR003609 -
Bpe04g00168 794 PANTHER OS07G0415500 PROTEIN 8 792 - -
Bpe04g00168 794 CDD PAN_AP_plant 330 412 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00168 - - - jre:108987254 1032.71
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00168 Bpe-Chr4:1092368 Bpe12g00233 Bpe-Chr12:2042979 5.34E-117 dispersed
Bpe03g01026 Bpe-Chr3:29668052 Bpe04g00168 Bpe-Chr4:1092368 0 transposed
Bpe02g00441 Bpe-Chr2:2888934 Bpe04g00168 Bpe-Chr4:1092368 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g703 . . . . . Bpe04g00168 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000774 3 4 0 1 3 3 3 3 3 3 1 2 2 2 3 3 3 2 2 2 3 3 4 3 4 3 2 6 0 11 87
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63276 PF00069 Pkinase 3.30E-52 CL0016 Bpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00168 Bpe_Chr04 FPKM 81.273163 80.842827 8.717817 10.60745 7.955284 6.827105 7.453643 23.395136 21.493578 20.82653