Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00177 GCAATGGCGATGATGCTGGACAACTGCGAAGGTATCCTACTTTCCTTGGACTCAAACAAATCAGTTCCTGCTCCGTTTCTGACCAAAACTTACCAGCTCGTCGACGATCCCTCTTCCGATCACATCGTTTCGTGGGGAGAAGATGACGCTACCTTCATCGTTTGGCGGCCACCAGAGTTCGCTCGCGATCTTATCCCAAACTACTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAACTCAATACTTACGGTTTCAAAAAGATCGTGCCAGACAGATGGGAGTTTGCAAACGAGTTCTTCAGAAAAGGAGAAAAGCATTTGCTATGTGAAATCCATAGGAGAAAAACTGCTCCGTCACAAATACCCATCAGCCACCAACTCTATAATCCTCCTCTCAGCTTCCACAGTCAGAGTTTCTTCCCATTTCCAAACCGATTCAGCGACTCGGCGTCAGACTCGGACGATCCAGGAAATAATTGGAGCGAGTCACGACAGTTTTCTTCATCCCCAAGAGGAAATTGTGTTGGGTTATCATTTTGCCGAGGCGATACTCACAACTATAACACCTCAATTGCAGCCCTATCTGAGGATAATGAGAGACTCAAACGAAGCAACTCAGTGTTACTATCGGAACTCGCCCATATGAAAAGACTATACAATGATATCATATATTTTGTTCAAAACCATGTGAAGCCTGTTACTCCGAGTATTTCCTGCCCTTCGAACCAGCTTTTCGGCTATTATTCAACGAACCCTAAAGAAGCTTCTTTAGCACATTTTGTCAACTCTCCCGATGCTACTTCGAAGAGCTCCATTACAACTCTTGAGGATGAATCCACCAGCCATTGCTCTATGACTAAACTGTTTGGTGCATCGCTTCAATCTAAGAAAAGATTGCACCCAGAACAATGCTATAATCTGATGAATATAGAAAGCATTAAAACTCGGTTGAGCTTGGATAATGAAGACTTGGAGCTGAATCTTATGCCTCCTTCCTCGTGA 1005 44.38 AMAMMLDNCEGILLSLDSNKSVPAPFLTKTYQLVDDPSSDHIVSWGEDDATFIVWRPPEFARDLIPNYFKHNNFSSFVRQLNTYGFKKIVPDRWEFANEFFRKGEKHLLCEIHRRKTAPSQIPISHQLYNPPLSFHSQSFFPFPNRFSDSASDSDDPGNNWSESRQFSSSPRGNCVGLSFCRGDTHNYNTSIAALSEDNERLKRSNSVLLSELAHMKRLYNDIIYFVQNHVKPVTPSISCPSNQLFGYYSTNPKEASLAHFVNSPDATSKSSITTLEDESTSHCSMTKLFGASLQSKKRLHPEQCYNLMNIESIKTRLSLDNEDLELNLMPPSS 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1144984 1146096 + Bpe014897.1 Bpe04g00177 101986

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00177 334 Gene3D - 18 117 IPR036388 -
Bpe04g00177 334 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 13 333 IPR027725 -
Bpe04g00177 334 Coils Coil 192 212 - -
Bpe04g00177 334 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bpe04g00177 334 SUPERFAMILY Winged helix DNA-binding domain 23 115 IPR036390 -
Bpe04g00177 334 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bpe04g00177 334 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bpe04g00177 334 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bpe04g00177 334 MobiDBLite consensus disorder prediction 149 171 - -
Bpe04g00177 334 PANTHER BNAC06G00310D PROTEIN 13 333 - -
Bpe04g00177 334 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00177 K09419 HSFF; heat shock transcription factor, other eukaryote - pvy:116125677 441.039
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe04g00177 Bpe05g00026 CCT
Bpe02g00432 Bpe04g00177 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00177 Bpe-Chr4:1144984 Bpe05g00026 Bpe-Chr5:529330 2.88E-137 dispersed
Bpe02g00432 Bpe-Chr2:2827522 Bpe04g00177 Bpe-Chr4:1144984 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g752 Blo01g01525 . Bda01g00571 Bda03g00208 Bpe02g00432 Bpe04g00177 . Bma01g02269 Cmo05g00175 . Cma01g01832 Cma09g00239 Car01g01429 . Sed10g1244 Cpe06g00166 . Bhi04g00361 Tan02g1805 Cmetu03g2201 . Hepe08g1292 . Lcy13g2088 Cla08g01578 Cam08g2076 Cec08g1659 Cco08g1787 Clacu08g1762 . Cre08g1547 Cone4ag1583 Cone7ag1367 Cone17ag0846 Cone20ag0194 Lsi04g01548 Csa04g02421 . Cme03g02056 . . . . . Bpe05g00026 . . Sed01g2675 Cmo01g01891 Cmo09g00233 . Cma05g00178 Car05g00150 . Cpe11g00146 Cpe02g00187 Bhi09g03307 Tan01g4763 Cmetu07g0842 . Hepe01g1775 Mch11g0300 . Cla05g02052 Cam05g2203 Cec05g2220 Cco05g2263 Clacu05g2195 Cmu05g2061 Cre05g2189 Lsi08g01481 Csa02g01940 Chy07g00142 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe06g00451 . 38 238 HSF AT4G17750 53.7 1.7e-56 217.2
Bpe14g00264 . 39 225 HSF AT4G17750 54.7 1.3e-53 207.6
Bpe14g00850 . 13 211 HSF AT4G17750 52.3 8.5e-53 204.9
Bpe02g00432 BCT,CCT 20 118 HSF AT4G17750 71.7 1.6e-38 157.5
Bpe05g00026 CCT 14 117 HSF AT4G17750 67.6 2.2e-37 153.7
Bpe04g00177 BCT,CCT 21 118 HSF AT4G17750 68.4 5.0e-37 152.5
Bpe05g00633 . 20 115 HSF AT4G17750 70.8 6.5e-37 152.1
Bpe07g00232 . 22 325 HSF AT5G16820 64.1 2.0e-91 333.2
Bpe05g00521 . 19 320 HSF AT5G16820 63.9 5.9e-91 331.6
Bpe06g00451 . 39 244 HSF AT5G16820 54.0 9.4e-57 218.0
Bpe14g00850 . 15 210 HSF AT5G16820 53.1 1.3e-53 207.6
Bpe14g00264 . 40 225 HSF AT5G16820 52.9 2.0e-51 200.3
Bpe05g00882 . 37 235 HSF AT5G16820 51.9 3.6e-48 189.5
Bpe07g00232 . 24 508 HSF AT1G32330 52.3 4.6e-112 401.7
Bpe05g00521 . 21 504 HSF AT1G32330 50.5 2.6e-107 386.0
Bpe14g00850 . 10 190 HSF AT1G32330 51.8 3.6e-48 189.5
Bpe02g00432 BCT,CCT 18 117 HSF AT1G32330 70.0 7.5e-38 155.2
Bpe04g00177 BCT,CCT 19 118 HSF AT1G32330 67.0 8.3e-37 151.8
Bpe05g00026 CCT 20 116 HSF AT1G32330 70.4 2.4e-36 150.2
Bpe06g00451 . 39 243 HSF AT3G02990 53.8 2.2e-58 223.4
Bpe14g00850 . 15 213 HSF AT3G02990 52.6 9.5e-54 208.0
Bpe14g00264 . 40 226 HSF AT3G02990 51.8 3.1e-52 203.0
Bpe02g00432 BCT,CCT 8 133 HSF AT3G02990 58.9 5.6e-38 155.6
Bpe02g01074 . 7 395 HSF AT4G18880 50.4 1.5e-95 346.7
Bpe14g00850 . 7 483 HSF AT4G13980 52.6 8.7e-124 440.7
Bpe14g00264 . 32 232 HSF AT3G22830 54.3 2.0e-60 229.9
Bpe05g00521 . 10 232 HSF AT3G22830 55.7 5.0e-59 225.3
Bpe07g00232 . 28 236 HSF AT3G22830 55.1 1.6e-57 220.3
Bpe06g00451 . 26 314 HSF AT3G51910 52.2 1.1e-67 253.4
Bpe13g01250 CCT 1 208 HSF AT3G51910 51.2 6.3e-50 194.5
Bpe14g00264 . 32 232 HSF AT3G51910 52.0 9.1e-49 190.7
Bpe05g00521 . 21 218 HSF AT3G51910 51.7 2.5e-46 182.6
Bpe13g01250 CCT 4 210 HSF AT5G54070 51.9 8.2e-52 201.1
Bpe02g02194 CCT 4 210 HSF AT5G54070 51.0 1.3e-49 193.7
Bpe07g00947 . 14 139 HSF AT4G36990 57.1 5.2e-39 158.3
Bpe05g00633 . 16 316 HSF AT4G11660 52.9 2.1e-80 296.2
Bpe02g00432 BCT,CCT 16 119 HSF AT4G11660 76.0 1.3e-45 180.6
Bpe05g00026 CCT 16 121 HSF AT4G11660 72.9 1.2e-43 174.1
Bpe04g00177 BCT,CCT 17 116 HSF AT4G11660 73.0 1.8e-42 170.2
Bpe02g00432 BCT,CCT 1 343 HSF AT1G46264 54.6 1.1e-91 333.6
Bpe04g00177 BCT,CCT 2 334 HSF AT1G46264 52.6 9.8e-88 320.5
Bpe05g00026 CCT 1 340 HSF AT1G46264 52.7 1.1e-86 317.0
Bpe07g00947 . 17 115 HSF AT1G46264 72.7 8.1e-42 167.9
Bpe14g00850 . 5 106 HSF AT1G46264 67.6 2.4e-38 156.4
Bpe05g00882 . 33 131 HSF AT1G46264 69.7 2.1e-37 153.3
Bpe13g01307 . 9 182 HSF AT3G24520 64.4 6.9e-59 224.6
Bpe08g00470 . 7 167 HSF AT3G24520 60.2 3.4e-50 195.7
Bpe06g00451 . 38 238 HSF AT4G17750 53.7 1.7e-56 217.2
Bpe14g00264 . 39 225 HSF AT4G17750 54.7 1.3e-53 207.6
Bpe14g00850 . 13 211 HSF AT4G17750 52.3 8.5e-53 204.9
Bpe02g00432 BCT,CCT 20 118 HSF AT4G17750 71.7 1.6e-38 157.5
Bpe05g00026 CCT 14 117 HSF AT4G17750 67.6 2.2e-37 153.7
Bpe04g00177 BCT,CCT 21 118 HSF AT4G17750 68.4 5.0e-37 152.5
Bpe05g00633 . 20 115 HSF AT4G17750 70.8 6.5e-37 152.1
Bpe07g00232 . 22 325 HSF AT5G16820 64.1 2.0e-91 333.2
Bpe05g00521 . 19 320 HSF AT5G16820 63.9 5.9e-91 331.6
Bpe06g00451 . 39 244 HSF AT5G16820 54.0 9.4e-57 218.0
Bpe14g00850 . 15 210 HSF AT5G16820 53.1 1.3e-53 207.6
Bpe14g00264 . 40 225 HSF AT5G16820 52.9 2.0e-51 200.3
Bpe05g00882 . 37 235 HSF AT5G16820 51.9 3.6e-48 189.5
Bpe07g00232 . 24 508 HSF AT1G32330 52.3 4.6e-112 401.7
Bpe05g00521 . 21 504 HSF AT1G32330 50.5 2.6e-107 386.0
Bpe14g00850 . 10 190 HSF AT1G32330 51.8 3.6e-48 189.5
Bpe02g00432 BCT,CCT 18 117 HSF AT1G32330 70.0 7.5e-38 155.2
Bpe04g00177 BCT,CCT 19 118 HSF AT1G32330 67.0 8.3e-37 151.8
Bpe05g00026 CCT 20 116 HSF AT1G32330 70.4 2.4e-36 150.2
Bpe06g00451 . 39 243 HSF AT3G02990 53.8 2.2e-58 223.4
Bpe14g00850 . 15 213 HSF AT3G02990 52.6 9.5e-54 208.0
Bpe14g00264 . 40 226 HSF AT3G02990 51.8 3.1e-52 203.0
Bpe02g00432 BCT,CCT 8 133 HSF AT3G02990 58.9 5.6e-38 155.6
Bpe02g01074 . 7 395 HSF AT4G18880 50.4 1.5e-95 346.7
Bpe14g00850 . 7 483 HSF AT4G13980 52.6 8.7e-124 440.7
Bpe14g00264 . 32 232 HSF AT3G22830 54.3 2.0e-60 229.9
Bpe05g00521 . 10 232 HSF AT3G22830 55.7 5.0e-59 225.3
Bpe07g00232 . 28 236 HSF AT3G22830 55.1 1.6e-57 220.3
Bpe06g00451 . 26 314 HSF AT3G51910 52.2 1.1e-67 253.4
Bpe13g01250 CCT 1 208 HSF AT3G51910 51.2 6.3e-50 194.5
Bpe14g00264 . 32 232 HSF AT3G51910 52.0 9.1e-49 190.7
Bpe05g00521 . 21 218 HSF AT3G51910 51.7 2.5e-46 182.6
Bpe13g01250 CCT 4 210 HSF AT5G54070 51.9 8.2e-52 201.1
Bpe02g02194 CCT 4 210 HSF AT5G54070 51.0 1.3e-49 193.7
Bpe07g00947 . 14 139 HSF AT4G36990 57.1 5.2e-39 158.3
Bpe05g00633 . 16 316 HSF AT4G11660 52.9 2.1e-80 296.2
Bpe02g00432 BCT,CCT 16 119 HSF AT4G11660 76.0 1.3e-45 180.6
Bpe05g00026 CCT 16 121 HSF AT4G11660 72.9 1.2e-43 174.1
Bpe04g00177 BCT,CCT 17 116 HSF AT4G11660 73.0 1.8e-42 170.2
Bpe02g00432 BCT,CCT 1 343 HSF AT1G46264 54.6 1.1e-91 333.6
Bpe04g00177 BCT,CCT 2 334 HSF AT1G46264 52.6 9.8e-88 320.5
Bpe05g00026 CCT 1 340 HSF AT1G46264 52.7 1.1e-86 317.0
Bpe07g00947 . 17 115 HSF AT1G46264 72.7 8.1e-42 167.9
Bpe14g00850 . 5 106 HSF AT1G46264 67.6 2.4e-38 156.4
Bpe05g00882 . 33 131 HSF AT1G46264 69.7 2.1e-37 153.3
Bpe13g01307 . 9 182 HSF AT3G24520 64.4 6.9e-59 224.6
Bpe08g00470 . 7 167 HSF AT3G24520 60.2 3.4e-50 195.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002351 3 2 1 1 3 2 2 1 2 2 2 2 3 2 2 3 2 2 3 1 2 2 2 2 2 2 2 3 3 1 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21189 PF00447 HSF_DNA-bind 4.10E-31 CL0123 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00177 Bpe_Chr04 FPKM 0.0 0.0 0.508833 0.140942 11.044703 10.391304 11.442523 0.448965 0.378202 0.196828