Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00178 ATGGAGATAATGATGATGATGATGCATCAAACGGACAAAAACCAAGCATTTTGCGGCGCCTACAATGATATGACTGAATTTTCACCGTCTGATTTTGCTGGTTCGAGCGGCTGTAATAACACCACTGCCATCCCACATTGCTCAGACAGCCTCCAACAGTCGTCTCATTCCTTCATAAATTTTCCTTTTTATTCTTGTTTGGCCAACAATGGTTCTTCATTATCGGCAGAGACGCAGGCGGCATTTTTATCCAGCGGTGACAATGGCTTCTTCTCTTCACCTGATTCTGAAAGACCTAATTCAATGGCCACAATGAGGGAGATGATTTTTCGAATTGCAGCGATGCAGCCAATTCATATAGACCCAGAATCGGTGAAGCCGCCGAAACGGAGGAACGTGAAGATATCGAAAGACCCACAAAGCGTAGCGGCTAGGCATCGGAGAGAGAAGATAAGTGAGAGAATCAGAATTCTTCAGAGGCTAGTACCAGGTGGGACGAAAATGGATACAGCTTCCATGTTGGATGAAGCTATTCATTACGTTAAATTCTTGAAGGGCCAAGTGCAGTCCTTGGAGAGAGCTGCAGCTAACAGGCCGGCTGGTTTAGAGTATCCCATTGCAGTCTCTAATGGCGGAAGCTATTTTCCCGTGGCAAAGGATTGCCAATTGCCTCGTCGAATTTAG 684 45.76 MEIMMMMMHQTDKNQAFCGAYNDMTEFSPSDFAGSSGCNNTTAIPHCSDSLQQSSHSFINFPFYSCLANNGSSLSAETQAAFLSSGDNGFFSSPDSERPNSMATMREMIFRIAAMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRREKISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKGQVQSLERAAANRPAGLEYPIAVSNGGSYFPVAKDCQLPRRI 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1152051 1152734 + Bpe014898.1 Bpe04g00178 101987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00178 227 Pfam Helix-loop-helix DNA-binding domain 144 184 IPR011598 GO:0046983
Bpe04g00178 227 Gene3D - 134 202 IPR036638 GO:0046983
Bpe04g00178 227 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 1 222 - -
Bpe04g00178 227 CDD bHLH_AtIND_like 136 192 - -
Bpe04g00178 227 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 139 194 IPR036638 GO:0046983
Bpe04g00178 227 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 135 184 IPR011598 GO:0046983
Bpe04g00178 227 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 222 IPR045843 GO:0003700|GO:0006355
Bpe04g00178 227 SMART finulus 141 190 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe04g00178 Bpe05g00025 CCT
Bpe04g00178 Bpe05g00025 ECH
Bpe02g00430 Bpe04g00178 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00811 Bpe-Chr1:9855772 Bpe04g00178 Bpe-Chr4:1152051 1.36E-07 dispersed
Bpe03g00644 Bpe-Chr3:26654708 Bpe04g00178 Bpe-Chr4:1152051 1.18E-39 dispersed
Bpe04g00178 Bpe-Chr4:1152051 Bpe05g00025 Bpe-Chr5:524999 2.36E-60 dispersed
Bpe06g00258 Bpe-Chr6:13313700 Bpe04g00178 Bpe-Chr4:1152051 9.06E-43 transposed
Bpe10g00254 Bpe-Chr10:9555078 Bpe04g00178 Bpe-Chr4:1152051 3.92E-39 transposed
Bpe02g00430 Bpe-Chr2:2819866 Bpe04g00178 Bpe-Chr4:1152051 9.76E-118 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21190 PF00010 HLH 1.40E-06 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00178 - - tcc:18591179 246.128