Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00184 ATGGCGGTGGGTGACGAATCATACGAAGAATGCCGTCGAAAGAGGCTGGAGGAGAATAAGAGAAGAATGGAAGCCCTCAACCTACCCCGCCTCTCTCTGACTTTTCGAAATCGCAAAGCTTCTTCTCTCAAGCTCTCCCCTGTGAAGAAGTCGCTTTTAATGGAGAAACAACGGGTGCTGGTGAGGAGATCAAGTCGCGTAGCGAAAAGTCCAGCTCCTGTTTATGCAGAAGTTCGTGTTGATCGTCTATCAATACCTAGAAGGATTTCCAAGAGCAGGGATTTTTCAGATCGAGTATATACTTCGACTCCGGCAAGGAAGGAAGCTATTGACAAAGCTGAACAGCTGAAATCTCAATTAGACCCCCAATTTCCCACCTTTGTTAAGCCAATGCTTCCATCTCATGTCAGCGGGGGTTTTTGGCTGGGCCTTCCAGCTCAATTCTGCAAAATGTGCCTACCAAAACAGGATGGGGTTATGACTTTGATAGACGAAGAAGGAGGAGAATCTCAAACAATATACTTAGCCAGAAAGACTGGACTTAGTGGTGGATGGAAGGGGTTTTCAGTTGATCATGGGTTGGCTGATGGAGATGCTTTAGTTTTTCAATTAATTAAACCCACAGCTTTTAAGGTGTACATAGTTAGAGTGAATAGTTCTGAAGAAGCTCACAGGCTCTGA 681 45.23 MAVGDESYEECRRKRLEENKRRMEALNLPRLSLTFRNRKASSLKLSPVKKSLLMEKQRVLVRRSSRVAKSPAPVYAEVRVDRLSIPRRISKSRDFSDRVYTSTPARKEAIDKAEQLKSQLDPQFPTFVKPMLPSHVSGGFWLGLPAQFCKMCLPKQDGVMTLIDEEGGESQTIYLARKTGLSGGWKGFSVDHGLADGDALVFQLIKPTAFKVYIVRVNSSEEAHRL 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1203363 1204542 - Bpe014905.1 Bpe04g00184 101993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00184 226 Gene3D - 102 219 IPR015300 -
Bpe04g00184 226 CDD B3_DNA 125 216 IPR003340 GO:0003677
Bpe04g00184 226 SUPERFAMILY DNA-binding pseudobarrel domain 120 218 IPR015300 -
Bpe04g00184 226 ProSiteProfiles B3 DNA-binding domain profile. 127 218 IPR003340 GO:0003677
Bpe04g00184 226 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 6 222 IPR044837 -
Bpe04g00184 226 SMART B3_2 127 218 IPR003340 GO:0003677
Bpe04g00184 226 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS03G0184500 6 222 - -
Bpe04g00184 226 Pfam B3 DNA binding domain 127 216 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00184 Bpe-Chr4:1203363 Bpe10g00174 Bpe-Chr10:4287249 7.39E-26 dispersed
Bpe04g00184 Bpe-Chr4:1203363 Bpe04g00197 Bpe-Chr4:1313810 1.70E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21191 PF02362 B3 1.60E-13 CL0405 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00184 - - zju:107420903 289.656