Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00192 TATAGAATGCAGTCGGACGGTTCTGATGCGCAGACGGCGCAGCAGCCGGAGCAGAATCAGCGGCAACAATCGCAGCCACCGCCACAGCAGTGGATGGCCATGCAGTATCCCGCGGCGGCGATGGTAATGCAGCACCAGATGATGCGGCATCAGCACTACGTTCCGTCCATACCGCCGCATTACGTGCCGTACCATCAGTTTCAGCCGTACCATCCGCTAGTGCAACAAAGTCAGCAGCATCACCAAGGATCTTCCGGCGAGAACAAGACGCTATGGGTCGGAGATTTGCACCATATGATGGACGAGAATTACCTCCTTAATTGCTTCGCTTCTACTGGCGAGATTTCTTCCATTAAGGTTATTCGAAATAAACAGTCTGGTTTATCAGAAGGCTATGGATTTGTGGAATTTTTGTCCCACGCAACAGCTGAGAAAGTTCTGCAGAATTACAGTGGCATCCTTATGCCAACTACAGATCAACCTTTTCGCCTTAACTGGGCGACATTTAGCTCAGGAGAAAGGCGTTCGGATAATGGTCCTGATCTTTCTATTTTTGTAGGAGATTTAGCAGCAGATGTTGATGACAGTTTATTGCGTGAAACTTTTGCTGGTAAATTTCCATCAGTTAAAGCAGCAAAAGTTGTTTTTGATGCCAACACTGGTCGTTCGAAGGGTTATGGTTTTGTGAGGTTTGGAGATGATAATGAGAGGTCACAGGCCATGACAGAGATGAATGGCGCTTATTGTTCGAGCAGGCCTATGCGCATTGGTGCAGCAACGCCAAGGAAGTCCTCTGGATACTCGCAGCAATTTTCCTCGCAAGGAGGATATGGATCAAACAGTTCCTTCACTCGGGGTTTTCAATCTGACGCTGATTCAACTAACACAACAATATTTGTTGGAGGGCTTGATCCTCATGCCAGTGATGAAGATCTTAGGCAGCCTTTCTCTCAATACGGGGAGATAGTTTCTGTCAAAATACCAGTTGGAAAAGGATGCGGGTTCGTGCAATTTGCCAGCAGAAACAATGCTGAGGAGGCTTTAGAAAAACTAAACGGTACCCAGGCGAGAGGAGAATTTGGCAACCAGTGGAACGGAGCATACTATGAAGGGCAGGTTTACGATGGATATGGATACGCCATGGCGTCCCCGCACGATCCCGGGATGTACGGTGCATCTGCTGCAATGTATGGAGCTTATCCTTTCTATGGAACCCATCAAGAGCAAGTAAATGCAAGGCTATTCGATTGGGTTGATTCTTCGATTGCATCATCTTGCTTGTTTTCTGAAATATTAATTGGCTATGAAGGTGGGCATGTTTCCATTTTTCCAGATTCGAAGATGAACAGTAGAGGAAGGAATAAGCTAAAGGCTCTGAAATCTTCCAAGAATGAAGAGGATAATGTGGAGATTCTGGAAACTAAGTTAAGGAATGGTGCAGCTAAAGAAACTTCAAGTGGACGAGTTTCGCGGGGAGAGAGAAAACAATCTCTGCAGAAAGACATTGATAAGCTAAAGAAGAAGCTGAGACAGGAAGAGAACATACAGAGAGCTTTGAAGAGGGCTTCCACAAGACCTTTGGGAGCTTTTCCTCGTCTCCCTCTTTTCCTCCCTCCATACATGATAGAGCTGATTGCAGAAGTAGCTGTTTTGGAGGAGGAGATTGTTCGACTTGAACAACAGGTTGTTCATTTTAGGAAAAACTTGGATCAGGAAGCTGTAAATTTGTCATTTTCAAAGAAGGTCAAAGAAAATTTATCTGGTTTATATGAGCCTTACTTGGTACATAATTCTAAAGTCATAGAGTCCAAGCTGGCAAATTCTACGACATATTCGCCATCTGTTTCTGGTTTGTTTTGCCACCTTTTACTCTCTCTCTCTCACTGGAAAAGTGGAACAAAAAGTTTTGAGTAG 1914 45.04 YRMQSDGSDAQTAQQPEQNQRQQSQPPPQQWMAMQYPAAAMVMQHQMMRHQHYVPSIPPHYVPYHQFQPYHPLVQQSQQHHQGSSGENKTLWVGDLHHMMDENYLLNCFASTGEISSIKVIRNKQSGLSEGYGFVEFLSHATAEKVLQNYSGILMPTTDQPFRLNWATFSSGERRSDNGPDLSIFVGDLAADVDDSLLRETFAGKFPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGAYCSSRPMRIGAATPRKSSGYSQQFSSQGGYGSNSSFTRGFQSDADSTNTTIFVGGLDPHASDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFASRNNAEEALEKLNGTQARGEFGNQWNGAYYEGQVYDGYGYAMASPHDPGMYGASAAMYGAYPFYGTHQEQVNARLFDWVDSSIASSCLFSEILIGYEGGHVSIFPDSKMNSRGRNKLKALKSSKNEEDNVEILETKLRNGAAKETSSGRVSRGERKQSLQKDIDKLKKKLRQEENIQRALKRASTRPLGAFPRLPLFLPPYMIELIAEVAVLEEEIVRLEQQVVHFRKNLDQEAVNLSFSKKVKENLSGLYEPYLVHNSKVIESKLANSTTYSPSVSGLFCHLLLSLSHWKSGTKSFE 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1262758 1270709 + Bpe014911.1 Bpe04g00192 102001

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00192 637 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 169 IPR000504 GO:0003723
Bpe04g00192 637 SUPERFAMILY RNA-binding domain, RBD 58 172 IPR035979 GO:0003676
Bpe04g00192 637 SUPERFAMILY RNA-binding domain, RBD 181 358 IPR035979 GO:0003676
Bpe04g00192 637 Gene3D - 88 168 IPR012677 -
Bpe04g00192 637 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 261 IPR000504 GO:0003723
Bpe04g00192 637 MobiDBLite consensus disorder prediction 487 502 - -
Bpe04g00192 637 Gene3D - 282 362 IPR012677 -
Bpe04g00192 637 Coils Coil 541 568 - -
Bpe04g00192 637 Gene3D - 170 281 IPR012677 -
Bpe04g00192 637 CDD RRM2_SECp43_like 181 260 - -
Bpe04g00192 637 MobiDBLite consensus disorder prediction 476 502 - -
Bpe04g00192 637 CDD RRM1_SECp43_like 90 170 - -
Bpe04g00192 637 Pfam Leucine-zipper of ternary complex factor MIP1 493 572 IPR025757 -
Bpe04g00192 637 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 24 410 - -
Bpe04g00192 637 SMART rrm1_1 183 257 IPR000504 GO:0003723
Bpe04g00192 637 SMART rrm1_1 297 361 IPR000504 GO:0003723
Bpe04g00192 637 SMART rrm1_1 90 165 IPR000504 GO:0003723
Bpe04g00192 637 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 298 358 IPR000504 GO:0003723
Bpe04g00192 637 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 154 IPR000504 GO:0003723
Bpe04g00192 637 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 254 IPR000504 GO:0003723
Bpe04g00192 637 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 296 359 IPR000504 GO:0003723
Bpe04g00192 637 Coils Coil 495 525 - -
Bpe04g00192 637 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 24 410 - -
Bpe04g00192 637 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00192 - - - cit:102622145 582.793
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00421 Bpe04g00192 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00315 Bpe-Chr1:1957857 Bpe04g00192 Bpe-Chr4:1262758 1.99E-91 dispersed
Bpe03g00795 Bpe-Chr3:27908511 Bpe04g00192 Bpe-Chr4:1262758 2.44E-115 dispersed
Bpe04g00192 Bpe-Chr4:1262758 Bpe11g00546 Bpe-Chr11:4185893 7.71E-116 dispersed
Bpe15g00903 Bpe-Chr15:18896488 Bpe04g00192 Bpe-Chr4:1262758 3.79E-12 dispersed
Bpe02g00421 Bpe-Chr2:2750293 Bpe04g00192 Bpe-Chr4:1262758 5.06E-32 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g817 . Blo12g00945 . Bda03g00225 Bpe02g00421 Bpe04g00192 . . . . Cma01g01862 Cma09g00212 Car01g01450 . . Cpe06g00146 . . . . . . . . . . . . . . . Cone4ag1558 . . . Lsi04g01584 Csa04g02384 . . . . . . . . . . Sed01g2644 Cmo01g01920 . . . . Car09g00179 . Cpe02g00164 Bhi09g03359 Tan01g4825 Cmetu07g0443 . . . . Cla05g02010 Cam05g2163 Cec05g2179 Cco05g2227 Clacu05g2155 Cmu05g2023 Cre05g2150 . . Chy07g00111 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000461 5 3 1 4 1 5 5 5 5 4 4 4 5 3 3 4 5 5 5 5 3 3 3 3 3 4 3 6 6 2 117
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00192 Bpe_Chr04 FPKM 0.0 0.85839 0.444089 0.505569 0.450725 0.166025 0.219999 3.189642 2.388868 2.778388