Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00201 ATGCCTAACGAATTGGGTGCTAGTTTTAGGAAATTTCATGCCGCCAAAACGGCGTCGGAAAAGGTTATTGTTGCCGCGAAAGCTGAGAGAGCGATGTCCAAATCGGCACTAGCTTGGGCGCTCGCTCACGTTGTTCGTCCTGGAGATTGTGTTATTTTTCTCGCTGTGTTCTCCATTGATAAAACTGGGAGGAGATTCTTAAACTTTCCTTTATGGACCGGAGATTGTGGAAGCGGCGGACCGGAGGAGCTGCCGGATCGGATTTGCGAGATCTCAGAATCCTGTTCGCAGATGGTGCTTCAGTTTAGTAGCCAAGTAGAGATCAAAGTGAGGATTAAGGTCGTATCAAGTTCATGTAGGGGTGCTGTTGCGGCTGAGGCAAAGACCAACAAAGTCAACTGGGTCGTACTGGACAAAAAACTAAAGCAGGAGGTGAAGTACTGCATTGAAGATCTAAGCTGCAATATTGTAACAATGAAGGGATCGGAACCACAAATTTTAAGGCTTAATTTGGGATGCTCAAATGAACCATCAACTCCCTTCTTTTCTGCTCTTTCTTCTCCAGGTGTGGATATAGCAAAGATACCATCGCAGAGGATGAACCAATCTACACCAGCAAGCAGCCCAGATGAACCTAGTACTTCAGATACAAGAACCTCAAGGGAAGGTTCTTTGTCTAGCTTCGACACAATTAATTCTCCCTACCTCCTATACGAGGAAAATCCTCTGTTTGAAGGACCTTTCGGGCGAAAATACTTAGCCATTGAGAAATACGAAGATACAAGTAGGTCACTAAACCCACTAGACTCAATTAGTAAAAAAGTGATCTCCCTGTCCGCTGCCCCAACATCAGTCATATCTGCTGGGCAGAAAAGTGCTTACTATATCCCTCAGAACCATATTATCAATGGAAACTGTCAAGCGTACCAAGACAAACGAAATTCTCAATCAACTATATCTTTGATTGCTAAGCCTTCACAAGGTCAACATGTGTCCGAGAGTAATGCAGGTGTTTTTCTCAACTATCCCTATAGCAAAGATGAAATGAACTCCAACATCAGGGATGCTGTCTCCTTAGGTAAAATATCCTCAATACCCCCACCATTATGCTCTATATGTCAACACAAAACTCCAGCTTTTGGTAAACCTCCGAGAAAATTCTCTTACAAAGAGCTACTGCTAGCTACAGACGGGTTCTCAAACTTAAATTTCTTGGCCAAAGGTGGTTTTGGCATTGTGTACAGAGGGGTATTGAGGGATGGCCAGGTTGTAGCAGTGAAGCAGTTGAAGTGTGAAGGTTTTCAAGCAGAAACTGATTTCTGTAGGGAAGTACGGGTTTTAAGCTGTGCGCAACATAGAAATGTTGTATTGCTAATTGGGTTTTGCATTGAGAGCACGACAAGGCTATTGGTATATGAATACATATGCAATCATTCCTTGGACTTCCATTTACATGAATCAAGAACCCGTTTAGATTGGCAGTCACGAGTTAGGATTGCAATAGGTGCCGCTCGTGGCTTAAGATATCTTCACGAAGATTGTAGAGTGGGTTGTATTGTGCACAAAGACTTGCGACCCAGGAATATACTCATGACACACGATTTTGAACCGCTGATTACTGATTTTGGGCTAGCCAGACAGCACTCTGAATGGCCCATGAATGAAGATGATGGGGTGATTGGATCGTCAGGGTATCTTGCTCCAGAGTACATCAATGGTGGAATGATTTCCCACAAAGTTGATGTGTATGCATTTGGAGTAGTTTTATTGGAACTTATAACGGGTCGAAGAATCAGTGAGCTTAAAAGTCTGGAGGGAAAGCTATTCACATATGATTGCTATCACCCTCTATCTGCTACACGAACGAACGATTTACTTGGAAATGGTTACCAATTTCTGGATTCGAATTTGATCTCTGACCAGCGCCCTGATTTCCCTCATCAACTACAGGCTATGACCCAAGCTGCTTCCATGTGTTTACGTCAAGATCCAGAATTGAGACCACCAATGTCTAAGATTCTTAGGGTGTTAGAAGGAGGAGATCCAACTATTGCTCTTGGTTTAGACTTGGATTCAGCTGGATGTAGAAGTGGCCATTTGAGAGGTCTCCCCTCCTCTGCACGAATTGAAGCAAAAAGAAGCCATTCTCGCAAGCTGTCCCACTAG 2166 43.67 MPNELGASFRKFHAAKTASEKVIVAAKAERAMSKSALAWALAHVVRPGDCVIFLAVFSIDKTGRRFLNFPLWTGDCGSGGPEELPDRICEISESCSQMVLQFSSQVEIKVRIKVVSSSCRGAVAAEAKTNKVNWVVLDKKLKQEVKYCIEDLSCNIVTMKGSEPQILRLNLGCSNEPSTPFFSALSSPGVDIAKIPSQRMNQSTPASSPDEPSTSDTRTSREGSLSSFDTINSPYLLYEENPLFEGPFGRKYLAIEKYEDTSRSLNPLDSISKKVISLSAAPTSVISAGQKSAYYIPQNHIINGNCQAYQDKRNSQSTISLIAKPSQGQHVSESNAGVFLNYPYSKDEMNSNIRDAVSLGKISSIPPPLCSICQHKTPAFGKPPRKFSYKELLLATDGFSNLNFLAKGGFGIVYRGVLRDGQVVAVKQLKCEGFQAETDFCREVRVLSCAQHRNVVLLIGFCIESTTRLLVYEYICNHSLDFHLHESRTRLDWQSRVRIAIGAARGLRYLHEDCRVGCIVHKDLRPRNILMTHDFEPLITDFGLARQHSEWPMNEDDGVIGSSGYLAPEYINGGMISHKVDVYAFGVVLLELITGRRISELKSLEGKLFTYDCYHPLSATRTNDLLGNGYQFLDSNLISDQRPDFPHQLQAMTQAASMCLRQDPELRPPMSKILRVLEGGDPTIALGLDLDSAGCRSGHLRGLPSSARIEAKRSHSRKLSH 721
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1363947 1367788 + Bpe014919.1 Bpe04g00201 102010

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00201 721 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 18 710 - -
Bpe04g00201 721 ProSitePatterns Tyrosine protein kinases specific active-site signature. 519 531 IPR008266 GO:0004672|GO:0006468
Bpe04g00201 721 PANTHER OS01G0253100 PROTEIN 18 710 IPR045271 GO:0004714|GO:0006468
Bpe04g00201 721 Pfam Protein tyrosine and serine/threonine kinase 404 676 IPR001245 GO:0004672|GO:0006468
Bpe04g00201 721 ProSiteProfiles Protein kinase domain profile. 399 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe04g00201 721 Gene3D Phosphorylase Kinase; domain 1 370 474 - -
Bpe04g00201 721 SUPERFAMILY Protein kinase-like (PK-like) 380 677 IPR011009 -
Bpe04g00201 721 Gene3D Transferase(Phosphotransferase) domain 1 476 683 - -
Bpe04g00201 721 MobiDBLite consensus disorder prediction 198 227 - -
Bpe04g00201 721 CDD STKc_IRAK 405 679 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00201 - - - zju:107420222 881.322
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe04g00201 Bpe05g00345 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00586 Bpe-Chr1:3817101 Bpe04g00201 Bpe-Chr4:1363947 1.60E-147 dispersed
Bpe04g00201 Bpe-Chr4:1363947 Bpe05g00345 Bpe-Chr5:17406581 1.33E-71 dispersed
Bpe04g00201 Bpe-Chr4:1363947 Bpe13g01312 Bpe-Chr13:18259946 1.13E-73 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g859 . Blo12g00921 . Bda03g00242 . Bpe04g00201 Bma04g00192 . . . . Cma09g00181 . . . Cpe06g00130 . . . . . . . . . . . . . . . Cone4ag1878 Cone7ag1787 . . Lsi04g01631 Csa03g04172 Chy04g00545 . . . . . . Bpe05g00345 . . . . Cmo09g00177 . . . Car09g00161 . . . . . . . . . Cla05g01971 . . . . . . . . . Cme04g00634
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006501 2 5 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63277 PF07714 PK_Tyr_Ser-Thr 6.00E-42 CL0016 Bpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00201 Bpe_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0