Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00208 ATGGAGAAATATTCGCAAAGGGAGAGTATTCTTTTAGGTTTTAGTCCTCAAATTTCATTTGGAAATCCGGCTTCTTCTTCGCCTAAAGTCGTCGACAGAAACTCCGACATTGATTTTAACGATGTATTCGGTGGGCCGCCGAGGAGACGGTCGTCTATTTGCGAGAGACGGTACAGCTTCAACGTACCAGCAGATTCGTTCACGTCGAAAGAAGACGATGAACTAGTCGTAAGTCGTAATCTGTGGGCGGGTTTAAGCGAGAAGCCTGTGTTTGGCAAAGAACCTGCATGTGGAAGACGATATCCGGGTAATGGTTTCTATGACGACGTATTCAAAGGCGAGGAATATTGTGCTTCTTCTCCTAAAAAGCACGATCGTGAACCTTTTTCGCAGATAGTCTCTAGGATTTCGAGCCCTATTATGCCTTTGCCGCCCATGGCTGAGACCTTCGGGAGTCCATCTCCGCCTGTACGATTTAGCTTACCTGCTAGAGTGGTCGGAGGGATAGACTTTTCTTTGTTCGGTTTGGCTGCTCACAGCTCGAACAAATGCAATGATTGGGCAACTGATGGAGTAAATCCATCATATTCTACTTCACTTTCTAGATTTTCAAGCCTGTCAAGTCAAGCTCAGGAGGATATAAAACACGATAGTCAGTCATTTTATCAGACCAGTTTCTCGTCCCAGGAGTTGAATCACAGCAGAGAGGGTCCATCTGAAGGAACAATCACTGGAGATAGTTTGGAGAAATCTTTAAATGGTCCTGAGGATTCAACCAATGGAAGCCAGTTTCAGTTTCATTTTTCAATATATAAGTGGGCTAATAAGGAGGTTCCTTTAACAATGCCACCGACGAGAATGAATTTATCCAGATCTAAAGAATCTCCTAAAACGAGGAAAAGCTCAAGTTTTAATGGAAGGACGACAGCTGAGAAGAATGGTAAGGAGTCGCCGACATCAACTCTGCGTAATTTTGATCATCCCTCCAACAATCATATCATCATGAGTACCAACTCTTTCAAATTAAGACATGGAAAAGAAGAAAGTGATTTTGCTTTGGAAGAGAAAAATCAACGAAGGAAAGAACCGTCTAAGATTGTTGAGGAACCAAGTCTACTCAGACCAGAATCAGAGAAGGCAGGCAGCCGTCGAGGTTCTGCTGATCCTGCTCTTTTTCCCAATTCAGCGAAATTCAACTCTTTTATCAATGAAGGTTTTTCTGTGATAACAGAGAAGGAGCTGCATGAGTATACAACAGAAGCCTTCAATCATGAATCTCGATCTTCATTTTTGTCGACTGAGGATGATGCTAAGGGAGCAACTAAAGGGACATACATAAAGGATGGTGGAGCTGAAACCGAGGCAAAAACCAATAGAAGATTATCTCTAACGGTTGATAATGGCAATATTTTGAAGAAAAACGATGGAGAGGTGACTCTGATTAGAAAGGCAGAAGTGGAAAAATCTAGCTCTCAAGCTTCACCTGCAAATTCTGGACTCAGTGATGGGAGACAGAGAGTTGGAAAGGTGAAAGAGTTTGTCAAAATTTTCAACCAAGAGCATACATCAACATCCGTGGGTGATCTTGACTGTCAAAGTCAGAGCTCTAATCAGAAAAAGAAAGGCACTTCTGGAACAGGGATTGGAGTTGGTGATTCAACTAGAATTGACGAGAAACTTCCACAAAAAAATTTAAATGAAACAGTTGCAAATGCGAAGAGTGTGGTTTCAAATGTTCCAATCGACGTGGATGAGCATTCCAAACAGCCACCAACGGAACAACCTGCTGATAAGACTTGCAGCGACGGAATCAAGACTGCATTCTCTGAACAGAACAGCCCTACGTTAAGTGCCGAATCTATTCCTGAAGATTCAAAGTTTACAGTCATTGATATTGATCTGGCCTCCCAAGAGGATTTCCTGATAAAAGAATTGCCCCAAGATGAGATTCAACGGTCACAAATGCAGAATGATCGTGAAGAAATAAAAGCCATTGATGCCAAAATACGACAATGGTGTAGAGGAAAGGAAGGGAATATACGATCACTGTTGTCAACCCTGCAATATGTTCTTTGGCCTGCGAGTGGGTGGAAACCGGTACCACTTGTTGACATCATAGACGGGAATGCAGTTAAAAGATCGTATCAAAGAGCTTTACTCTGTTTACACCCAGACAAACTTCAACAGAGGGGCGTTACATCACTACAAAAATACACTGCAGAAAAAGTTTTTGATGTTTTGCAGGAGGCTTGGACTCTTTTCAGCTCAGTTGGTCTATTATGA 2283 42.36 MEKYSQRESILLGFSPQISFGNPASSSPKVVDRNSDIDFNDVFGGPPRRRSSICERRYSFNVPADSFTSKEDDELVVSRNLWAGLSEKPVFGKEPACGRRYPGNGFYDDVFKGEEYCASSPKKHDREPFSQIVSRISSPIMPLPPMAETFGSPSPPVRFSLPARVVGGIDFSLFGLAAHSSNKCNDWATDGVNPSYSTSLSRFSSLSSQAQEDIKHDSQSFYQTSFSSQELNHSREGPSEGTITGDSLEKSLNGPEDSTNGSQFQFHFSIYKWANKEVPLTMPPTRMNLSRSKESPKTRKSSSFNGRTTAEKNGKESPTSTLRNFDHPSNNHIIMSTNSFKLRHGKEESDFALEEKNQRRKEPSKIVEEPSLLRPESEKAGSRRGSADPALFPNSAKFNSFINEGFSVITEKELHEYTTEAFNHESRSSFLSTEDDAKGATKGTYIKDGGAETEAKTNRRLSLTVDNGNILKKNDGEVTLIRKAEVEKSSSQASPANSGLSDGRQRVGKVKEFVKIFNQEHTSTSVGDLDCQSQSSNQKKKGTSGTGIGVGDSTRIDEKLPQKNLNETVANAKSVVSNVPIDVDEHSKQPPTEQPADKTCSDGIKTAFSEQNSPTLSAESIPEDSKFTVIDIDLASQEDFLIKELPQDEIQRSQMQNDREEIKAIDAKIRQWCRGKEGNIRSLLSTLQYVLWPASGWKPVPLVDIIDGNAVKRSYQRALLCLHPDKLQQRGVTSLQKYTAEKVFDVLQEAWTLFSSVGLL 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1423371 1427178 - Bpe014926.1 Bpe04g00208 102017

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00208 760 PANTHER J DOMAIN-CONTAINING PROTEIN REQUIRED FOR CHLOROPLAST ACCUMULATION RESPONSE 1 1 754 - -
Bpe04g00208 760 MobiDBLite consensus disorder prediction 422 455 - -
Bpe04g00208 760 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 1 754 - -
Bpe04g00208 760 Gene3D DnaJ domain 634 758 IPR036869 -
Bpe04g00208 760 MobiDBLite consensus disorder prediction 486 505 - -
Bpe04g00208 760 MobiDBLite consensus disorder prediction 225 260 - -
Bpe04g00208 760 MobiDBLite consensus disorder prediction 16 43 - -
Bpe04g00208 760 MobiDBLite consensus disorder prediction 486 501 - -
Bpe04g00208 760 MobiDBLite consensus disorder prediction 16 33 - -
Bpe04g00208 760 MobiDBLite consensus disorder prediction 341 383 - -
Bpe04g00208 760 MobiDBLite consensus disorder prediction 524 555 - -
Bpe04g00208 760 MobiDBLite consensus disorder prediction 524 550 - -
Bpe04g00208 760 MobiDBLite consensus disorder prediction 301 338 - -
Bpe04g00208 760 MobiDBLite consensus disorder prediction 281 391 - -
Bpe04g00208 760 SUPERFAMILY Chaperone J-domain 659 755 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00208 - - - qsu:112012159 527.709
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe04g00208 Bpe14g00394 CCT
Bpe04g00208 Bpe14g00394 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00208 Bpe-Chr4:1423371 Bpe15g00422 Bpe-Chr15:15763796 4.90E-31 dispersed
Bpe04g00208 Bpe-Chr4:1423371 Bpe06g00310 Bpe-Chr6:14429594 5.74E-37 transposed
Bpe04g00208 Bpe-Chr4:1423371 Bpe10g00275 Bpe-Chr10:10100414 7.44E-37 transposed
Bpe04g00208 Bpe-Chr4:1423371 Bpe13g00437 Bpe-Chr13:11932668 1.05E-36 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g224 Blo01g01553 . . . . Bpe04g00208 . . Cmo04g02503 Cmo15g00664 . . . . Sed01g3080 . . Bhi04g01874 Tan11g1245 Cmetu03g1597 . Hepe02g2217 . Lcy10g1250 Cla08g00620 Cam08g1034 Cec08g0623 Cco08g0735 Clacu08g0744 . Cre08g0552 . . Cone17ag0822 . . . . Cme03g00497 . . . Bda13g01471 . Bpe14g00394 . Bma02g00207 . . . . . Car04g02309 Car15g00604 Cpe01g02071 . . . . . . . . . . . . . . . Lsi08g00460 . Chy03g00758 .
Vvi18g905 . . Bda01g00541 . . Bpe04g00208 Bma04g00202 Bma01g02308 . . Cma01g01891 Cma09g00172 Car01g01475 . . . . . . . . . . . . . . . . . . Cone4ag1897 . Cone17ag1326 . Lsi04g01642 Csa03g04186 Chy04g00532 . . . . . . . . . . Cmo01g01954 Cmo09g00167 . . . Car09g00152 . Cpe02g00141 . . . . . . . Cla05g01961 Cam05g2110 Cec05g2121 Cco05g2174 Clacu05g2099 Cmu05g1976 Cre05g2095 . . . Cme04g00612
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005505 1 5 1 2 1 1 2 1 1 1 0 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00208 Bpe_Chr04 FPKM 5.393898 5.352483 6.21735 5.20139 7.908188 9.715842 8.476369 12.371299 11.14572 11.133308