Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bpe04g00209 | ATGGCGACCAATCGGTTCGTGTGCGAGATCTGCAACAAAGGATTTCAGCGGGACCAGAATCTGCAGCTTCATCGGAGAGGCCACAACTTGCCGTGGAAGCTCCGACAACGGACGAGCAAAGAGGTGCGGAAGAGAGTCTACGTCTGCCCGGAGGCTTCATGCGTTCACCACGACCCGGCCAGAGCTCTAGGAGATCTCACAGGAATAAAGAAGCATTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAGTGCGAACGATGCTCGAAGAAATACGCCGTACAGTCCGATTGGAAGGCGCACATGAAAACTTGTGGAACACGAGAGTATAAATGCGATTGTGGCACTCTATTTTCTAGGAGGGACAGCTTCATCACCCACAGAGCTTTCTGCGATGCTTTAGCGGAGGAAAGTGCACGAGCCCATCAAACCCTAGCAATCTCCAACGCAGAAGGAAAAGGAAATGATTCTTCTGTAAAAATGATTGTGGCTTCACCTCCTCCACCGCCGCTTACGCCGTCCAACACAGTTGTTTCTCCAGCTTTGTCCATTCAAAGTTCGGAGTTGCCAGAGAACCCAATCGGAGTGTCGCCGTCGGCTCTGAACTCGACCGCCATTAATAATCCTATTCCAAGCAACAACTGCAGTAGTGTATTTGCTAGTGTATTTGCATCTACTTCCACAGCTTCAATCTCTCAACAAACAGGGACTTCCCCTCCTCCTTCATTCTCCACTCTAGTCTCCACCTTTACCAGCTCTGATATTAGTCCTAATCTCCCTGCAATGTCCGGCGTTGAACAAACCTCACTTTCTCTTGCCTCCTCTCTCTATCTCCCGGCCAAGAATTTCTCTCTCTATGCTTCTTCCGAACTAGACCACCGCCATTTCACCCCGACTCTTCAGCCGCCTGCCATGTCTGCTACAGCGTTGCTTCAAAAGGCAGCGCAAATGGGAGCTGCCGCATCTAGCGCTTCGTTGCTTCGCAGGTTTGGGTTAGCCATGTCTTCTCCCTCAGCTCAAGAAACCATTTCTAATCACCATTGGACTGGTAGCACAAAGCTCGAGAGCAGCAGAGCCTTTTTAACCGCTGGGTTAGGGCTAGGAATTCCATCTCCAGCTTCTAGTTTAAACGATGCAATGATGGTTTCGTCGTCTCCGTTCGGCAATCAGTTAATGACACGTGATCTTCTAGGGCTCGGCATCGGAGAAACTTCGGCTTCCACCACTGGACTCTCTGCGTTGCTTACTTCATTCGGGAATGGCTTTGAAGTTGCCGCCTCTACAACTTATGGAGGAGGAGGAAGCGTTGGTGGAGCTGAGTCTGGAAGAAACAAGGACAATGGTTGTACATCAGATAGAAAGCCAAGAGGAACCACTTGA | 1377 | 50.25 | MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKRVYVCPEASCVHHDPARALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARAHQTLAISNAEGKGNDSSVKMIVASPPPPPLTPSNTVVSPALSIQSSELPENPIGVSPSALNSTAINNPIPSNNCSSVFASVFASTSTASISQQTGTSPPPSFSTLVSTFTSSDISPNLPAMSGVEQTSLSLASSLYLPAKNFSLYASSELDHRHFTPTLQPPAMSATALLQKAAQMGAAASSASLLRRFGLAMSSPSAQETISNHHWTGSTKLESSRAFLTAGLGLGIPSPASSLNDAMMVSSSPFGNQLMTRDLLGLGIGETSASTTGLSALLTSFGNGFEVAASTTYGGGGSVGGAESGRNKDNGCTSDRKPRGTT | 458 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 1434848 | 1436716 | - | Bpe014927.1 | Bpe04g00209 | 102018 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bpe04g00209 | 458 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 1 | 438 | - | - | |
Bpe04g00209 | 458 | Gene3D | Classic Zinc Finger | 2 | 29 | - | - | |
Bpe04g00209 | 458 | SUPERFAMILY | beta-beta-alpha zinc fingers | 5 | 103 | IPR036236 | - | |
Bpe04g00209 | 458 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 8 | 28 | IPR013087 | - | |
Bpe04g00209 | 458 | Gene3D | Classic Zinc Finger | 61 | 140 | - | - | |
Bpe04g00209 | 458 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 6 | 28 | IPR013087 | - | |
Bpe04g00209 | 458 | SMART | c2h2final6 | 82 | 102 | IPR013087 | - | |
Bpe04g00209 | 458 | SMART | c2h2final6 | 6 | 28 | IPR013087 | - | |
Bpe04g00209 | 458 | SMART | c2h2final6 | 47 | 77 | IPR013087 | - | |
Bpe04g00209 | 458 | MobiDBLite | consensus disorder prediction | 431 | 458 | - | - | |
Bpe04g00209 | 458 | Pfam | Zinc-finger of C2H2 type | 6 | 28 | - | - | |
Bpe04g00209 | 458 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 2-LIKE | 1 | 438 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bpe03g00451 | Bpe-Chr3:23599642 | Bpe04g00209 | Bpe-Chr4:1434848 | 2.54E-102 | dispersed | |
Bpe04g00209 | Bpe-Chr4:1434848 | Bpe06g00051 | Bpe-Chr6:611594 | 7.71E-133 | dispersed | |
Bpe08g01328 | Bpe-Chr8:14495662 | Bpe04g00209 | Bpe-Chr4:1434848 | 9.63E-93 | dispersed | |
Bpe10g00110 | Bpe-Chr10:1913481 | Bpe04g00209 | Bpe-Chr4:1434848 | 3.45E-144 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
21194 | PF12874 | zf-met | 0.0032 | CL0361 | Bpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bpe04g00209 | K25869 | - | zju:107420256 | 464.151 |