Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00213 ATGGGCGAGAGCCACGAGACGACTACTGTGGGGATAAATCCACCTTCTTCTCTCCATGCAGTCCACAGTGAGTGTGGTCAAGAATCGTGTAATTTGGCATTGCAGGGAGGACACAAAATCGATATAAGAAAACAGATGTTTTGCAACCGGCCTTTGAATATGAAGAACATCCGTGCTGTAGGGTTTGACATGGATTACACATTGGCACAATACAAGCTTGAAACTTTTGAAACTCTCACGTACGAAGGCACAATAAAAAAATTGGTGTATGACTTGGGATATCCTCAAGAGTTGCTAGATTGGTCATTTGATTGGAATTACATGGTCAGAGGCTTGGTTCTTGACAAAAAAAGAGGAAACATCTTGAAGATGGATCAACATAAGTATGTTAAAGTAGCCTACCATGGATTCAAGGAATTATCCAAGGAAGATAAAGTTGCGACATATGGAAATACTCTAGTAAGGGATTCTTTTGATGAGCCCGGTTATGCTCTCATCGATACTCTCTTTTCACTCGCCGAAGCCTACATGTTTGCTCAACTGGTTGAGTTTAAAGATAGTAATCCAGAAAAAGTCAGAGATTATGCTCATATGTACAAAGATGTTCGAGCTGCAGTTGATTTGTCCCATCGCGATGGAACTCTGAAGCAAATGGTTGCTAAAGATCCTAAAAGGTATATAAATGAAGACAGTTCTTTAGTACCGATGCTGAACATGTTTAAAGATTCTGGTCGTTTTACTTTCTTGGCAACAAACAGTTTATGGGATTATACTAACATTGTGATGAATTTCCTTTGTTGCTCACGAACAATGGATGGTATTAACAGATGCACTCTTGACTGGCTTCAGTATTTTGACATTGTCATTACTGGCTGTAACAAACCAAGCTTTTTTCACGAGGACAAGCATTCTAATCTATTTGAGGTTGAGGTAGAGTCAGGAATGCTTATTAATACTAATAACGGCTCTCCTATTACCCAGGTTAGCGTTGCAAAGCTTGTTTCTTTGGTTTCTGCAGGAGGCAATGTTGCACATCTGCATAGACTTTTTTCTATCGAGTCAAGCTCCCAGGCTCAAAGGGAGCAAGTTCGGCTCAACCATCAACTTGCTCATCTGGCATACCATCAAAAGTTTCACAAGATTTGGGGACAACTCATGAAAACTGGCTACCAAAACTCCCGCTTTGCTCATCAGGTTGAAAGATTTGCCTGCCTTTACACCAGTCAAGTCACCAACTTAGGCCTCTATTCCCCAGATAAATATTTCAGACCACATGAAGATTTCATGGCCCATGAATGGCAGACCTTGGCCGTT 1314 40.94 MGESHETTTVGINPPSSLHAVHSECGQESCNLALQGGHKIDIRKQMFCNRPLNMKNIRAVGFDMDYTLAQYKLETFETLTYEGTIKKLVYDLGYPQELLDWSFDWNYMVRGLVLDKKRGNILKMDQHKYVKVAYHGFKELSKEDKVATYGNTLVRDSFDEPGYALIDTLFSLAEAYMFAQLVEFKDSNPEKVRDYAHMYKDVRAAVDLSHRDGTLKQMVAKDPKRYINEDSSLVPMLNMFKDSGRFTFLATNSLWDYTNIVMNFLCCSRTMDGINRCTLDWLQYFDIVITGCNKPSFFHEDKHSNLFEVEVESGMLINTNNGSPITQVSVAKLVSLVSAGGNVAHLHRLFSIESSSQAQREQVRLNHQLAHLAYHQKFHKIWGQLMKTGYQNSRFAHQVERFACLYTSQVTNLGLYSPDKYFRPHEDFMAHEWQTLAV 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1462151 1465698 + Bpe025583 Bpe04g00213 102022

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00213 438 SUPERFAMILY HAD-like 44 434 IPR036412 -
Bpe04g00213 438 Gene3D - 202 360 IPR023214 -
Bpe04g00213 438 PANTHER 5'-NUCLEOTIDASE DOMAIN-CONTAINING 359 435 IPR008380 -
Bpe04g00213 438 Pfam 5' nucleotidase family 47 355 IPR008380 -
Bpe04g00213 438 PIRSF NT5C2 344 438 IPR016695 -
Bpe04g00213 438 PIRSF NT5C2 28 356 IPR016695 -
Bpe04g00213 438 PANTHER CYTOSOLIC PURINE 5-NUCLEOTIDASE 359 435 - -
Bpe04g00213 438 PANTHER CYTOSOLIC PURINE 5-NUCLEOTIDASE 35 357 - -
Bpe04g00213 438 TIGRFAM HAD-IG-Ncltidse: HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase 46 355 IPR008380 -
Bpe04g00213 438 PANTHER 5'-NUCLEOTIDASE DOMAIN-CONTAINING 35 357 IPR008380 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00213 - - - jre:108982271 516.153
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe04g00213 Bpe05g00090 CCT
Bpe02g01689 Bpe04g00213 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00213 Bpe-Chr4:1462151 Bpe05g00790 Bpe-Chr5:21247704 4.74E-38 dispersed
Bpe02g01689 Bpe-Chr2:19465798 Bpe04g00213 Bpe-Chr4:1462151 5.17E-35 wgd
Bpe04g00213 Bpe-Chr4:1462151 Bpe05g00090 Bpe-Chr5:1558571 1.67E-34 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g945 . Blo12g00908 . Bda03g00260 . Bpe04g00213 Bma04g00209 . . . . . . Car12g00446 . . Cpe07g00424 . . . . . . . Cla08g01488 Cam08g1978 Cec08g1552 Cco08g1689 Clacu08g1668 . Cre08g1451 . . Cone17ag1342 Cone20ag0139 . . . Cme03g01956 . Blo18g00815 Bda08g01284 Bda01g01493 Bpe02g01689 Bpe05g00090 . Bma05g00120 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01395 Csa02g02053 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003481 3 3 3 2 3 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 3 1 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00213 Bpe_Chr04 FPKM 3.12505 3.581075 1.777802 1.720598 8.364803 7.910382 8.311364 12.516097 13.083794 11.605556