Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00217 ATGACACTGAAAAGCGTAGTTCGTGAAATTGGAGATAGCATTGGATGCTTGAGAAGAAAAGGGGAAGAAGGAAGGACATTACGTCGTCCAGGAAAATCTCATATTGCACCGGAACAGCCGCCATGTTCACCTTCTTCTTCTTCTTCAGTTCCAGAGAGCCGATGGGCGAGTCTTCCCATCGAATTGTTTCTGGACATAATTCAGAGAGTAGAATCAAGCGAGACCTCCTGGCCTGGCAGGAGAGATGTTGTTGCCTGTGCTTCAGTTTGTAAATCATGGAGGGAGGTTGCTAAAGGAGTTGTTAAAACCCCAGAGCAGTCTGGGTTGCTTACCTTTCCCATCTCCCTCAAACAGCCGGGACCAAGGGACACTCCGATCCAGTGCTTTATAAAGAGGGAGAGTTCAACTGCAACCTATCTACTCTATCTCGGTCTCAGTCCGGCTCTGTCTGGCAACATGAGCAAGTTGTTACTAGCTGGAAGGAAGGTTAGACGGGCAACCCATACTGAATTTGTGATATCCTTAGTCGCCGATGATTTTTCTCGAGCAAGTAATACTTACATTGGAAAGTTAAGATCCAATTTCATGGGAACAAAGTTTTCAGTCTATGACAGTCAGCCACGACAGGATCCAATTCTGCAAACAACTTGCAGGCCACATCGAAGAATCCATTTAAAGCAGGTTTCTCCTAGAGTACCCATTGGAAACTATATAATTTCCTCCATACATTATGAGCTTAATGTCCTACGAACCCGAGGTCCGAGGAGAATGCAGTGCACAATGAACTCAATACCATTTTCATCCGTTCTAGAAGGTGGCACAGCCAATACTCCAACTGAATTCATAAACTGTGTCGATGAAAAACAAAATCTTCCATTGTCACTACCAAAGAAGAAGAAGAAGCATCAAGTTGAGTTAAGCTCAGCTAGTCTATCTGAGCCTTTCCTCCCGATTCATTCTCCACTTGTTCTGAAGAATAAAGCTCCGAGATGGCATGAACAGCTCCAATGTTGGTGCCTGAATTTCAGAGGGCGTGTAACAGTCGCCTCTGTCAAGAATTTCCAGCTGGTGGCATCAGCTGATCGACACCATAATATCTCCGAGACTGAACAAGAGAGAGTGATTCTGCAATTTGGTAAAATTGGAAAAGATATATTCACCATGGATTACCAATATCCGCTCTCTGCATTCCAAGCCTTTGCAATCTGCTTGAGCAGCTTCGACACTAAACCTGCCTGCGAATGA 1245 44.74 MTLKSVVREIGDSIGCLRRKGEEGRTLRRPGKSHIAPEQPPCSPSSSSSVPESRWASLPIELFLDIIQRVESSETSWPGRRDVVACASVCKSWREVAKGVVKTPEQSGLLTFPISLKQPGPRDTPIQCFIKRESSTATYLLYLGLSPALSGNMSKLLLAGRKVRRATHTEFVISLVADDFSRASNTYIGKLRSNFMGTKFSVYDSQPRQDPILQTTCRPHRRIHLKQVSPRVPIGNYIISSIHYELNVLRTRGPRRMQCTMNSIPFSSVLEGGTANTPTEFINCVDEKQNLPLSLPKKKKKHQVELSSASLSEPFLPIHSPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVASADRHHNISETEQERVILQFGKIGKDIFTMDYQYPLSAFQAFAICLSSFDTKPACE 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1476882 1478414 - Bpe014934.1 Bpe04g00217 102026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00217 414 MobiDBLite consensus disorder prediction 20 51 - -
Bpe04g00217 414 Gene3D - 48 100 - -
Bpe04g00217 414 SUPERFAMILY F-box domain 40 97 IPR036047 GO:0005515
Bpe04g00217 414 SUPERFAMILY Tubby C-terminal domain-like 104 414 IPR025659 -
Bpe04g00217 414 ProSitePatterns Tub family signature 2. 399 414 IPR018066 -
Bpe04g00217 414 Pfam Tub family 116 409 IPR000007 -
Bpe04g00217 414 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 414 - -
Bpe04g00217 414 Gene3D Tubby Protein; Chain A 112 414 IPR025659 -
Bpe04g00217 414 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Bpe04g00217 414 PRINTS Tubby superfamily signature 187 211 IPR000007 -
Bpe04g00217 414 PRINTS Tubby superfamily signature 392 414 IPR000007 -
Bpe04g00217 414 PRINTS Tubby superfamily signature 324 341 IPR000007 -
Bpe04g00217 414 PRINTS Tubby superfamily signature 371 390 IPR000007 -
Bpe04g00217 414 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Bpe04g00217 414 PRINTS Tubby superfamily signature 171 187 IPR000007 -
Bpe04g00217 414 Pfam F-box domain 55 101 IPR001810 GO:0005515
Bpe04g00217 414 ProSitePatterns Tub family signature 1. 342 355 IPR018066 -
Bpe04g00217 414 PANTHER TUBBY-RELATED 1 414 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g00385 Bpe04g00217 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00217 Bpe-Chr4:1476882 Bpe07g00349 Bpe-Chr7:2736000 9.29E-143 dispersed
Bpe02g00385 Bpe-Chr2:2514648 Bpe04g00217 Bpe-Chr4:1476882 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21196 PF01167 Tub 6.30E-104 CL0395 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00217 K19600 - zju:107420271 598.201