Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00226 ATGAGCGCGTGCTATGGCGGTTTTCTTACTCCTTCTTGTCTACTCCTAATTCGTAAACCCTATTATTCATCGACTCTTTCAAGCCCTAATCCTTTTCTCTACTCTTTCACTTCGAGAAAAGAACCGAGTAGTTTTTCAAGAATCTTTTCCGGTGCGCTCCAGCAAGGTCCTGTTGTTGTCACTTCCGAAGACGTTTCCTTGGAGAATCAAGATATTGGTTCCGGGGAAGACGTCCTTAGAGTCGTCAATGGTGCAGGGGCCGTCCAGTCAAATGAAAAGACGGGAAGTTTGACAAATAAGTTAGAAAAGAAAGGAGAAGATGTGGATAATTCCGATAATAGGTTCAAGCTGCGAAATGGAAAAGAAATCTTTGAAGAGAAGGCCTACCTTGTGGGAGTTGAACGTAAAGGGGACATTGAGAATTCTTTTGGCATAGAGGAATCAATCAAGGAACTGGAACAACTAGCTGACACAGCTGGACTTATGGTTGTTGGTTCCACATACCAGAAATTAGCTTCTCCAAACCCCAGGACTTACATAGGCTCTGGAAAAGTGGCAGAAATCAAGAGTTCAATTCGTGCACTGGATGTTGAAACTGTAATATTTGATGATGAGCTTTCAGCTGGGCAATTGCGAAATTTAGAAAAGACATTTGGTGGAGGTGTTAGAGTCTGTGACCGTACTGCATTGATCCTGGATATCTTTAACCAGAGAGCAGCAACACATGAGGCAGCTTTACAGGTTGCATTAGCACAAATGGAATACCAGTTGCCTCGATTAACAAAAATGTGGACTCATCTTGAGCGTCAAGCAGGAGGTAGGGTGAAGGGTATGGGTGAGAAACAGATTGAAGTGGATAAACGAATCTTACGGACACAAATTGGAACTCTCAAAAAGGAATTAGAATCAGTTAGAAAGCATCGACAACAATATCGAAACCGACGTGTTTCTGTACCTGTCCCAGTAGTATCGTTGGTGGGATATACAAATGCTGGCAAGAGTACACTTCTGAATCATTTGACTGGAGCTAATGTCTTGGCGGAGGATCAACTGTTTGCCACCCTTGACCCAACTACAAGAAGGGTTCAGATGAAAAATGGAAAAGAGTTTCTCCTAACTGATACTGTTGGCTTTATCCAAAAATTACCTACTACTCTGATCGCTGCTTTCAGAGCAACGTTAGAAGAAATTTCAGAGTCATCACTTTTGGTACATGTGGTAGACATCAGTCATCCACTAGCAGAGAAACAGATAGAAGCCGTTGAAAAAGTTCTTTTTGAATTAGATGTGTCATCAATTCCTAAGTTGGTGGTTTGGAACAAGATTGATAAAGTTAGTAATCCTGAACAAATCAGGTTGGAAGCAAAGAATAGAGATGTTGTTTGCATATCGGCTGTTAATAACATTGGTTTAGACGAATTTTGTGATGCTGTGCAGGAAAAACTAAAGGACTTGATGGTATGGGTGGAAGCTTTGATTCCATTTGACAAAGGGGAGCTTCTTAGCACTGTCCATCAAGTTGGAATGGTAGAGAGAACTGAATACACAGAAAATGGTACGTTGGTGAGGGCGCACGTTCCACTTAGGTTTGCAAGGCTACTCACACCAATGAGGCAACTTTGTGTATCTTGA 1632 41.85 MSACYGGFLTPSCLLLIRKPYYSSTLSSPNPFLYSFTSRKEPSSFSRIFSGALQQGPVVVTSEDVSLENQDIGSGEDVLRVVNGAGAVQSNEKTGSLTNKLEKKGEDVDNSDNRFKLRNGKEIFEEKAYLVGVERKGDIENSFGIEESIKELEQLADTAGLMVVGSTYQKLASPNPRTYIGSGKVAEIKSSIRALDVETVIFDDELSAGQLRNLEKTFGGGVRVCDRTALILDIFNQRAATHEAALQVALAQMEYQLPRLTKMWTHLERQAGGRVKGMGEKQIEVDKRILRTQIGTLKKELESVRKHRQQYRNRRVSVPVPVVSLVGYTNAGKSTLLNHLTGANVLAEDQLFATLDPTTRRVQMKNGKEFLLTDTVGFIQKLPTTLIAAFRATLEEISESSLLVHVVDISHPLAEKQIEAVEKVLFELDVSSIPKLVVWNKIDKVSNPEQIRLEAKNRDVVCISAVNNIGLDEFCDAVQEKLKDLMVWVEALIPFDKGELLSTVHQVGMVERTEYTENGTLVRAHVPLRFARLLTPMRQLCVS 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1520395 1526408 - Bpe014941.1 Bpe04g00226 102035

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00226 543 Pfam 50S ribosome-binding GTPase 323 441 IPR006073 GO:0005525
Bpe04g00226 543 Gene3D - 140 238 IPR042108 -
Bpe04g00226 543 PRINTS GTP1/OBG GTP-binding protein family signature 390 408 IPR006073 GO:0005525
Bpe04g00226 543 PRINTS GTP1/OBG GTP-binding protein family signature 323 343 IPR006073 GO:0005525
Bpe04g00226 543 CDD HflX 280 482 IPR030394 GO:0005525
Bpe04g00226 543 Coils Coil 294 314 - -
Bpe04g00226 543 Gene3D - 320 486 IPR027417 -
Bpe04g00226 543 ProSiteProfiles HflX-type guanine nucleotide-binding (G) domain profile. 321 486 IPR030394 GO:0005525
Bpe04g00226 543 PANTHER GTP-BINDING PROTEIN HFLX 102 530 IPR016496 GO:0005525
Bpe04g00226 543 Hamap GTPase HflX [hflX]. 149 511 IPR016496 GO:0005525
Bpe04g00226 543 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 321 492 IPR027417 -
Bpe04g00226 543 TIGRFAM small_GTP: small GTP-binding protein domain 322 478 IPR005225 GO:0005525
Bpe04g00226 543 PANTHER GTP-BINDING PROTEIN 6-RELATED 102 530 - -
Bpe04g00226 543 TIGRFAM GTP_HflX: GTP-binding protein HflX 128 482 IPR016496 GO:0005525
Bpe04g00226 543 Gene3D - 239 306 - -
Bpe04g00226 543 Pfam GTP-binding GTPase Middle Region 238 315 IPR032305 -
Bpe04g00226 543 Pfam GTP-binding GTPase N-terminal 146 235 IPR025121 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00226 K03665 hflX; GTPase - zju:107420493 795.038
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00226 Bpe-Chr4:1520395 Bpe14g01139 Bpe-Chr14:8490580 5.24E-11 dispersed
Bpe13g00143 Bpe-Chr13:8917795 Bpe04g00226 Bpe-Chr4:1520395 2.22E-30 transposed
Bpe04g00226 Bpe-Chr4:1520395 Bpe05g00117 Bpe-Chr5:2366563 3.34E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1004 . . . Bda03g00271 . Bpe04g00226 Bma04g00221 . . . . Cma09g00132 . . . Cpe06g00092 . . . . . . . . . . . . . . . . . Cone17ag1363 Cone20ag0118 Lsi04g01703 Csa03g04243 Chy04g00472 . . . . . . . . . . Cmo01g01996 Cmo09g00129 . . . Car09g00118 . . . . . . . . . Cla05g01909 Cam05g2046 Cec05g2055 Cco05g2110 Clacu05g2039 Cmu05g1918 Cre05g2040 . . . Cme04g00518
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011128 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00226 Bpe_Chr04 FPKM 13.166728 14.647274 17.30562 15.867593 10.432954 10.045973 12.002224 11.164866 10.13665 11.04568