Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00228 ATGGCAGGTTTCTTCTATCTAGGTGGAAGAGAAGGCCCACCAAGCAAACAAGACGAAGATCAAGCTGAAAGGGAGCAGAATCTGTTTTTGTACAGAAACGAGGAGATCTACAACAAAGGTTTCGAGATATGGCAGCAGTACAGTCATCAGCAACAACAAAACCAAAACTTGAACAATCACCTGTTGTTTGGAGTGGGTCCTAGCCACCAAAGAAACTTCCTCAACATCTCCGATGAGCCGTCTAGATCGGGATTAACAGCGATTAGACAAGGAGGGTTTGGAGGAGGAATGAATTGTCAAGACTGTGGAAATCAAGCTAAAAAAGATTGCTCCCATTTGAGGTGTAGAACTTGCTGCAAGAGTCGAGGGTTTCAGTGTGATACCCACGTTAAGAGCACGTGGGTTCCTGCTGCCAAACGCCGGGAGAGACAGCTCCAGCTCTCCGGTTTGAATCCTCGTGAAGAAGATCAGCAATTTTCGAAAAGGCAGAGGGACAATCAAGGACCCTCGACTTCACTTGCTTGGTTGGAGCTGGCACAATTTCCAGCGGAGGTGAATGCTGCAGCAGTATTTCGGTGTGTGAAAGTGAGCGCTATAGATGATGTGGATGATCAGTTTGCTTATCAGACTGCAGTGAACATCGGCGGACATGTTTTCAAGGGAATTCTGTATGATCAAGGACCGGAAGGAATCTATGCCGCCGGAGGAGACAGTTCCCCGGCCCAGGGCGGAGAGGGAATCCAGCAGCTCAATCTCATAACAGGAATGACTGCAAATACTTCGGCAGCTACCACTTCTAACCCATCTGCATCATTGGTTCATGCTTCATTATATCCTCAGCTCAACTCTTTTATGACTGGTACGCAATTCTTCCAACCTTCAAGGTCTTAA 891 47.25 MAGFFYLGGREGPPSKQDEDQAEREQNLFLYRNEEIYNKGFEIWQQYSHQQQQNQNLNNHLLFGVGPSHQRNFLNISDEPSRSGLTAIRQGGFGGGMNCQDCGNQAKKDCSHLRCRTCCKSRGFQCDTHVKSTWVPAAKRRERQLQLSGLNPREEDQQFSKRQRDNQGPSTSLAWLELAQFPAEVNAAAVFRCVKVSAIDDVDDQFAYQTAVNIGGHVFKGILYDQGPEGIYAAGGDSSPAQGGEGIQQLNLITGMTANTSAATTSNPSASLVHASLYPQLNSFMTGTQFFQPSRS 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1542559 1543619 - Bpe014944.1 Bpe04g00228 102037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00228 296 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 293 IPR007818 GO:0003700|GO:0006355
Bpe04g00228 296 Pfam Domain of unknown function (DUF702) 96 229 - -
Bpe04g00228 296 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 293 - -
Bpe04g00228 296 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 98 140 IPR006510 -
Bpe04g00228 296 MobiDBLite consensus disorder prediction 147 168 - -
Bpe04g00228 296 MobiDBLite consensus disorder prediction 1 23 - -
Bpe04g00228 296 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 180 228 IPR006511 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g01715 Bpe04g00228 CCT
Bpe04g00228 Bpe05g00123 CCT
Bpe02g01715 Bpe04g00228 ECH
Bpe04g00228 Bpe05g00123 ECH
Bpe02g00368 Bpe04g00228 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00228 Bpe-Chr4:1542559 Bpe06g00032 Bpe-Chr6:385485 1.22E-78 dispersed
Bpe10g00138 Bpe-Chr10:2605842 Bpe04g00228 Bpe-Chr4:1542559 2.21E-88 wgd
Bpe02g01715 Bpe-Chr2:19629997 Bpe04g00228 Bpe-Chr4:1542559 1.71E-114 wgd
Bpe02g00368 Bpe-Chr2:2420906 Bpe04g00228 Bpe-Chr4:1542559 1.25E-168 wgd
Bpe04g00228 Bpe-Chr4:1542559 Bpe05g00123 Bpe-Chr5:2598777 2.17E-122 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21198 PF05142 DUF702 1.50E-61 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00228 - - jre:108991308 372.859