Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00229 ATGGTTTTTCTTCCTCGTTTCTCTTCTTCTTCGTTTCTCCAGACTGATTTTTGGGGGAGAAGAAGGATGGCGAGGGGGAAGATTCAGATCAAGAGGATAGAGAATCTGACCAACAGGCAGGTCACCTACTCGAAGAGAAGAAAAGGGTTGTTCAAGAAGGCGGAGGAGCTCACTGTTCTCTGCGATGCTAAGGTTTCCCTCATCATGTTTTCTAGCACTGGGAAACTCGATGAATATTCCAGCCGGACTACCACGACCAAGGAGTTACTCGATCGTTACCAGAGGGAATCAAATACTGATCTTTGGAGCTCGCAATATGAGAAAATGCAGGAAAATCTGACGAAGCTGAAAGAGGTTAATAGGAATCTCCGAACGCAGATCAGGCAAAGGATCGGTGAATGTCTCAACGATCTCAACTTTGAAGAACTTCTTTGTCTTGAACAAGAAATTGAAGATGCTGTCAAGGTTATTTGGGATCGCAAGTATAAGGTGCTGGATGCCGAGTATCAAAAACACAAGAAAAAGTTCAAGAACGAGGGAGGTGTTCATCAGAAAATTCTCCAGGAATTCGAAGTGGCAGCAGAGGAAGATCCACATTATGGACTAGTCGAAAGCGGAGGAGGTTGCGACTCCATTACTGGTTTCTACAAAGCAGGTCCCCACGTATTTGCACTCAGACTGCAACCTAACCAACCTTATCTGGCCGGAGCAGTACCAGATCTAACAACTTATCCCTTGCTCGAGTAA 747 45.25 MVFLPRFSSSSFLQTDFWGRRRMARGKIQIKRIENLTNRQVTYSKRRKGLFKKAEELTVLCDAKVSLIMFSSTGKLDEYSSRTTTTKELLDRYQRESNTDLWSSQYEKMQENLTKLKEVNRNLRTQIRQRIGECLNDLNFEELLCLEQEIEDAVKVIWDRKYKVLDAEYQKHKKKFKNEGGVHQKILQEFEVAAEEDPHYGLVESGGGCDSITGFYKAGPHVFALRLQPNQPYLAGAVPDLTTYPLLE 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1552256 1553747 + Bpe014945.1 Bpe04g00229 102038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00229 248 PANTHER SERUM RESPONSE FACTOR HOMOLOG 23 245 - -
Bpe04g00229 248 CDD MADS_MEF2_like 24 102 IPR033896 GO:0000977|GO:0045944
Bpe04g00229 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 32 79 IPR002100 GO:0003677|GO:0046983
Bpe04g00229 248 Pfam K-box region 103 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe04g00229 248 Coils Coil 106 126 - -
Bpe04g00229 248 SUPERFAMILY SRF-like 25 117 IPR036879 GO:0003677|GO:0046983
Bpe04g00229 248 ProSiteProfiles MADS-box domain profile. 23 83 IPR002100 GO:0003677|GO:0046983
Bpe04g00229 248 ProSiteProfiles K-box domain profile. 106 198 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe04g00229 248 ProSitePatterns MADS-box domain signature. 25 79 IPR002100 GO:0003677|GO:0046983
Bpe04g00229 248 Gene3D - 36 127 IPR036879 GO:0003677|GO:0046983
Bpe04g00229 248 PRINTS MADS domain signature 60 81 IPR002100 GO:0003677|GO:0046983
Bpe04g00229 248 PRINTS MADS domain signature 45 60 IPR002100 GO:0003677|GO:0046983
Bpe04g00229 248 PRINTS MADS domain signature 25 45 IPR002100 GO:0003677|GO:0046983
Bpe04g00229 248 SMART madsneu2 23 82 IPR002100 GO:0003677|GO:0046983
Bpe04g00229 248 PANTHER APETALA3 23 245 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g00630 Bpe04g00229 BCT
Bpe02g00367 Bpe04g00229 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00630 Bpe-Chr2:4110782 Bpe04g00229 Bpe-Chr4:1552256 1.55E-39 dispersed
Bpe04g00229 Bpe-Chr4:1552256 Bpe06g00030 Bpe-Chr6:367437 3.70E-60 dispersed
Bpe10g00142 Bpe-Chr10:2896564 Bpe04g00229 Bpe-Chr4:1552256 2.49E-66 wgd
Bpe02g00367 Bpe-Chr2:2414262 Bpe04g00229 Bpe-Chr4:1552256 7.04E-120 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21199 PF01486 K-box 3.20E-15 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00229 K09264 - csv:101218008 290.812