Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00232 ATGGGTGGGGAGGAGATGCCCATGTCTGCTAAAAGATCACATCCAAAAGAAGGTGGTTTTGAGCCAGATGATGACAAGCCAATTGGGTATTTATTCAAATTGAAGAAACATCGTATATCTACGAAACCCAAATGGGGCATGGATAACAGTGTTGGCAGAAGAAAAAAAGCTGGGATCACTGGAGGGAAGTTGGTGCTTGAAGATGGGGACTTTTGGGGAATGGATGATACTTTAGCAAGCTTTAGGAACAAGTTGAAAGGTCCAAAGAAGAACATTGGAACTGTGCGAGAGCGAAGTTCATCTTCACAGACATCAGAGTATTCTAATCCATCCACAAGTGAGCTTGCTGGATTCAGGGTTCCAAATGTGGGACTGGCTTCAATGGTTAAGAGAAATGATCAAGAACTGAGTGATGTAGAACCCGATATATCAATGGGTGAATGGGTAGAAAAGAGAATAAAAATAAAAGCGGAGAGACTTAATTCAAATTTGAGGACACCTGATGGCAATGTCGGTGGAAAATCTTTGGATTTATGCCCATTAGATTCAGTTTCAGCTGGAGAAACAATGGCGGTAGATCAAAGGTTAGTAAAAAATTTTCCTCAAATTTTGAACCATATTGAAATGAGTCATAATGAAAATCGAAGGTTAAGTCACTCCCAATGGATTGAAAAAGAAGCTGAAGAATATCTCAGCTGTTCAAATTTTAAAGAGGAGTCTACTCTAGGTCACATTGGATTGGATGAATTATGTGATAGGGAAAGCAAGGAGTTCCCTTGTTTGCAATCAAGAGATGGTTTTCCTTCTTCCAGTCAGAAAAATATGACCCCAAAACTCTACGATGGATTGAAGCATTGTACTGGAACTAAAACCAGGACTTTGGTCAATGGTACTCTGGATACATTACATTCTTGTTATGAAAAAAAGTATGTTAAAGAAAAACAAGGGGTGGATGGGGGCATTTGGGTTAGTTGTTGCTATGAATTCTCCAAAAAGTCAGCTAGTATTTTGGCCGAACACAATTTAGGCACAGATTATGATGGCAAAGACAATCTACTTTATAATTATGTCGATAAATTGCCTGATAGGTCAGGCAAGAATGGATCCAGTGATGATTGTAAATTGGCTTTTACAATGGGAGTATCATCTAGAGATTTTCCTCAATATTCCATTCATCATAACAAGGCAAATGATGCTTGGAAATCTGAAGTTGAGATTTATCCTGATCCGAGCTTACCAGATGAAAATGAAACTTGGATACAGCGTGCAACACCTGCTCAGGATTTTGTAAAAGTTGATAAGCTGTTAACTGTTCAGCGTGCGGCACGGAAAACTAAAAAGCCCAGGCATGGGGATATGGCTTATGAAGGGGATGGTGACTGGGAGATCTTGAGAGATGAGTCTGACTTTCTTGAAAACCATCGTAACATGGCAAATGATCATGGTTTAAAGGGAAGAAGTGATTCTGGTCTTAATAGCGTTAAGGATGTTGGAACTGGTTGGGCAGCTGCAATATCTGTCGGACTGAAAGCTCATGCAGTTGGCCTCATTGAAAAAATTAAATTCAAGGAGGTCTTAAAACGCAAGGGTGGGGTTCAAGAGTATCTGGAATGCAGGAACCTAATCTTAGACCTCTGGTTTAAAGATGTTACTCGTATTCTGCACCTTGATGATTGTGGGATCACAGATAGTATCTCAACTGATGGACACTCACGTGCTTCCCTTGTTAAAGAGGTCTATTCATTTCTCAATCAAAGCGGTTATATTAATTTTGGTATTGCTTCAGAGAAGGATACATCAGAACCAAATCATAATTATACAGTTCTCAAAGAAAGAAAGAACCGACATGTTACTGATTCTTTGGCTGCTGACATGGAGGATGGCATTTCATTTATTATCGGCCACGCTCAAAGTTCTGAGGCTTCTACAGAGGTCAAGAATGGTGTTAAATTTGATGTGGAAGAACCGTCAGAAGCTACCAGAGGACGAGACTTGACTTCTGCAGTCAAGTCAGAACTTCTGAACAGGGATGAGCTTGAAGAAGACAATGCTTGTCTAGAAGACAACAGTGATATTGTAAAAGAATCCAGCACATTAATTAGTGAGAATGTGTCAAGGAGTGATCTATCTTGTGACATAATAGATTGCAAGTCTGACACAATAGATTGCAAGTCTTTCCCTAGCTTGATTCCTGATATGACAAATGTCTTTCCTGGTATTCATTCTTCCTCTGGAAGCCACAAAGGAGGAAATCATTATTATCAGCCTAATGCAGAAGTTGGAAAGAGAATCATCATCATAGGAGCTGGTCCTGCTGGATTAACTGCTGCGCGGCATTTGAAACGTCAGGGGTTTATCGTCACAATACTTGAGGCCAGAAGTAGAATAGGTGGTCGTGTTTACACTGATCGCAGTACTTTTTCCGTCCCTGTTGATCTTGGTGCAAGCATTATTACAGGTGTTGAGGCTGATGTTGCGACTGAAAGAAGACCTGATCCATCTTCATTGATTTGTGCTCAGCTGGGTCTTGAGTTGACTGTGCTAAAGAGTGACTGCCCCCTCTATGACATTGTAACATGTCAAAAAGTTCCAGCTGATGTGGATGAAGCATTGGAAGCTGAATACAACAGTCTTCTTGATGACATGGTATTACTTGTTGCACAAAAGGGAGAATGTTCTATGAAAATGTCTCTTGAGGAAGGTTTAGAATATGCTCTTGAGCGGCGGCGCTGTATGGCACAATTAGGCAGGGAGATTGAAGAAAAGATGCCGAAAAATTCTACAGACCTTTTATCTATCAGTAAAAGTGTTCCTGGGACTAAGTGTTTTAAGGAAGAGATTTTGACTCCTCTTGAGAGGAGGGTGATGGACTGGCATTTTGCTAACTTGGAGTATGGTTGTGCTGCTTTGCTCAAGGAAGTTTCTCTTCCAAACTGGAATCAAGATGATGTTTATGGGGGTTTTGGAGGACCTCATTGTATGGTCAAAGGGGGTTATAGCACTGTTATTGAGTCACTTGGAGAAGGACTTTGCATCCATCTGAATCATTTAGTAACAAATATTTCTTACGATTTGCAGATTGCCTCCCCATGTGATGATCCTACTGGGGAAGTTAAAGTTTCCACCTCCAATGGCAGCGTGTTTCTTGGAGATGCTGTCTTGGTCACAGTTCCTCTTGGGTGCTTGAAAGCAGAAACCATAAAGTTTTCTCCACCATTGCCCCAATGGAAGCATTCTTCCATTCAACGCCTTGGTTTTGGAGTTCTTAATAAAGTTGTTTTGGAATTTCCTGAAGTCTTTTGGGATGACTCTGTTGATTACTTTGGAGCAACTTCTGAGGAAACAAACTGGAGAGGTCAGTGCTTTATGTTCTGGAATGTTAGGAAAACTGTTGGTGCTCCTGTTCTGATAGCTTTAGTTGTTGGTAAGGCGGCTGTAGATGGGCAAAATCTGAGTTCTTCTGATCATATAAACCATGCATTAATGGTTCTTCGTAAACTTTTTGGAGAAGCTTTGGTGCCTGATCCAGTTGCATCTACAGTAACTGAGTGGGGCAAGGATCCTTTTAGCTACGGTGCTTATTCATATGTAGCAGTTGGAGCATCTGGGGAGGATTATGATATTTTGGCCAGGCCTATTGGGAACTGTTTATTTTTTGCTGGTGAAGCTACTTGCAAGGAGCATCCTGATACTGTTGGTGGTGCAATGATGAGTGGTCTTCGGGAGGCAGTACGCATTATCAATGTATTGAATACAGGATATGATTGGATTGCAGAAGTCGAGGCAATGGAGGCTGCTCAAAGACAATCTGATGGTGAAAAGGATGAATACAAGGACATATTAAGGAGACTTGACGCAGTGGAGCTTTCTAATGACCTGTGTCATAAATCCCTTGGCACTGGCACAATTATGACGAGGGAAAATTTACTAGAGAATATGTTTTTTAATGCTAAAACCACAGCAGGACGGTTGTGTCTGGCAAAAGAGTTACTGAATCTTTCTGTTGAAACATTGAAGTCATTTGCAGGGACCAAAGAAGGGCTTACTGTGCTCAATTCTTGGATACTGGATTCAATGGGGAAAGATGGGACCCAACTTTTGAGGCATTGTGTCCGACTTCTCGTGGTCGTTTCAACTGATCTTCTTGCGGTGCGATTGTCTGGCATTGGGAAAACTGTCAAAGAAAAGGTTTGTGTACATACAAGCCGGGACATTCGTGCCATTGCAAGTCAGTTGGTTAGTGTCTGGCTTGAAGTTTTTCGAAAAGAAAAAGCTTCAAATGGTGGAATGAAATTGAGGCCAGCAATGGCTATTGAATCTTTAAAACGAAAATATCTGAAAGATTCTTCTCGGAAGCCCCCTTTGCATTCCAACTCTGGTGGCGAGGAAGGTAAAGGTGTGTTACAGACATCTTCTACTGCTGGAAGTCATTTGCCTATCAGTGTAGGATTGAGTAAATCTTATTCCAAACCATTGAAGCAAGACTTGCAATGGAAATCAGATATCAGCTCATCAAGGTCTAGAGGATCATTGAGTGACGATGCTGCTATTTCTGAAGAAGAACAGGCTGCATTTGCTGCTGCTGAAGCAGCCCGTGCAGCACTTGCGGCTGCTGAGGCACATGCATTTTCAGGTGCCAAGTGCAATACAACCTTGCAGCTTCCAAAGATACCCTCATTTCATAAATTTGCTAGACGAGAGCAATATGGTCAGAGAGGTGAATGTGATATTCGGATGAGGTGCTCTGGCAGTATTTTGGGAAAACAAGATAGTATATCAGAAATAGACTCAAGAAATTGCAAAGTAAGAAACTGGTCTGTTGACTTTTCTGCTCCTTGTGTCAATCTTGATAGTTCAAGACTATCTGTGGATAATCTCTCTCTGAAAAGCCATTCCAATGAAATTATTGGTCAGTTAAACTGTAGGGAGCACTCAGCAGAAAGCGTGGCTGTGGATAGTAGCATTTATACAAAAGTGTGGGTTGATACGTCTGGTAGTGAGGGGATCAAGGACTATCATGATATTGAGAGATGGCAATCGCAAGCAGCAGCAGCCAGTAATAATTTCTTTTGGCCACACAGCCATATAAAGGACGAGGAGGATTCAAATGCCACTTTGAAGGAAGCAACTTGGAATAATAAAGTAGTGAATCAAAGCTCAGTTTCACAAGTAACAATGACCAAGGAGTACATAAGAAAAGATTATCCCCGAGGAGCAGAGAAAATTAAACAGGCCGTTGTAGATTATGTTGCAACATTGTTAATGCCTCTTTATAAAACAAGGAAAATCGACAAGGAGGGATACAAGTCAATAATGAAGAAAAGCGCGACTAAGGTTATGGAGCGGGCTACAGATGCAGAAAAAGCTATGGCTGTTCATGAATTTCTTGATTTGAAACGTAGGAACAAGATTCGTCCCTTTGTCGACAAATTAATAGAGAGGCACATTGCAATGAATACAGAAGGGAAATGA 5472 41.17 MGGEEMPMSAKRSHPKEGGFEPDDDKPIGYLFKLKKHRISTKPKWGMDNSVGRRKKAGITGGKLVLEDGDFWGMDDTLASFRNKLKGPKKNIGTVRERSSSSQTSEYSNPSTSELAGFRVPNVGLASMVKRNDQELSDVEPDISMGEWVEKRIKIKAERLNSNLRTPDGNVGGKSLDLCPLDSVSAGETMAVDQRLVKNFPQILNHIEMSHNENRRLSHSQWIEKEAEEYLSCSNFKEESTLGHIGLDELCDRESKEFPCLQSRDGFPSSSQKNMTPKLYDGLKHCTGTKTRTLVNGTLDTLHSCYEKKYVKEKQGVDGGIWVSCCYEFSKKSASILAEHNLGTDYDGKDNLLYNYVDKLPDRSGKNGSSDDCKLAFTMGVSSRDFPQYSIHHNKANDAWKSEVEIYPDPSLPDENETWIQRATPAQDFVKVDKLLTVQRAARKTKKPRHGDMAYEGDGDWEILRDESDFLENHRNMANDHGLKGRSDSGLNSVKDVGTGWAAAISVGLKAHAVGLIEKIKFKEVLKRKGGVQEYLECRNLILDLWFKDVTRILHLDDCGITDSISTDGHSRASLVKEVYSFLNQSGYINFGIASEKDTSEPNHNYTVLKERKNRHVTDSLAADMEDGISFIIGHAQSSEASTEVKNGVKFDVEEPSEATRGRDLTSAVKSELLNRDELEEDNACLEDNSDIVKESSTLISENVSRSDLSCDIIDCKSDTIDCKSFPSLIPDMTNVFPGIHSSSGSHKGGNHYYQPNAEVGKRIIIIGAGPAGLTAARHLKRQGFIVTILEARSRIGGRVYTDRSTFSVPVDLGASIITGVEADVATERRPDPSSLICAQLGLELTVLKSDCPLYDIVTCQKVPADVDEALEAEYNSLLDDMVLLVAQKGECSMKMSLEEGLEYALERRRCMAQLGREIEEKMPKNSTDLLSISKSVPGTKCFKEEILTPLERRVMDWHFANLEYGCAALLKEVSLPNWNQDDVYGGFGGPHCMVKGGYSTVIESLGEGLCIHLNHLVTNISYDLQIASPCDDPTGEVKVSTSNGSVFLGDAVLVTVPLGCLKAETIKFSPPLPQWKHSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATSEETNWRGQCFMFWNVRKTVGAPVLIALVVGKAAVDGQNLSSSDHINHALMVLRKLFGEALVPDPVASTVTEWGKDPFSYGAYSYVAVGASGEDYDILARPIGNCLFFAGEATCKEHPDTVGGAMMSGLREAVRIINVLNTGYDWIAEVEAMEAAQRQSDGEKDEYKDILRRLDAVELSNDLCHKSLGTGTIMTRENLLENMFFNAKTTAGRLCLAKELLNLSVETLKSFAGTKEGLTVLNSWILDSMGKDGTQLLRHCVRLLVVVSTDLLAVRLSGIGKTVKEKVCVHTSRDIRAIASQLVSVWLEVFRKEKASNGGMKLRPAMAIESLKRKYLKDSSRKPPLHSNSGGEEGKGVLQTSSTAGSHLPISVGLSKSYSKPLKQDLQWKSDISSSRSRGSLSDDAAISEEEQAAFAAAEAARAALAAAEAHAFSGAKCNTTLQLPKIPSFHKFARREQYGQRGECDIRMRCSGSILGKQDSISEIDSRNCKVRNWSVDFSAPCVNLDSSRLSVDNLSLKSHSNEIIGQLNCREHSAESVAVDSSIYTKVWVDTSGSEGIKDYHDIERWQSQAAAASNNFFWPHSHIKDEEDSNATLKEATWNNKVVNQSSVSQVTMTKEYIRKDYPRGAEKIKQAVVDYVATLLMPLYKTRKIDKEGYKSIMKKSATKVMERATDAEKAMAVHEFLDLKRRNKIRPFVDKLIERHIAMNTEGK 1823
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1566093 1574112 - Bpe014947.1 Bpe04g00232 102041

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00232 1823 PANTHER FLAVIN MONOAMINE OXIDASE 429 1820 - -
Bpe04g00232 1823 Gene3D - 501 603 IPR036388 -
Bpe04g00232 1823 SUPERFAMILY FAD/NAD(P)-binding domain 761 1250 IPR036188 -
Bpe04g00232 1823 MobiDBLite consensus disorder prediction 1 25 - -
Bpe04g00232 1823 SUPERFAMILY Homeodomain-like 500 596 IPR009057 -
Bpe04g00232 1823 Pfam SWIRM domain 512 591 IPR007526 GO:0005515
Bpe04g00232 1823 PRINTS Adrenodoxin reductase family signature 786 799 - -
Bpe04g00232 1823 PRINTS Adrenodoxin reductase family signature 763 785 - -
Bpe04g00232 1823 MobiDBLite consensus disorder prediction 87 113 - -
Bpe04g00232 1823 MobiDBLite consensus disorder prediction 1445 1474 - -
Bpe04g00232 1823 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1344 1428 IPR035441 -
Bpe04g00232 1823 Pfam Flavin containing amine oxidoreductase 772 1247 IPR002937 GO:0016491
Bpe04g00232 1823 SUPERFAMILY FAD-linked reductases, C-terminal domain 1085 1196 - -
Bpe04g00232 1823 PANTHER LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 3 429 1820 - -
Bpe04g00232 1823 ProSiteProfiles SWIRM domain profile. 500 600 IPR007526 GO:0005515
Bpe04g00232 1823 MobiDBLite consensus disorder prediction 94 113 - -
Bpe04g00232 1823 Coils Coil 669 696 - -
Bpe04g00232 1823 MobiDBLite consensus disorder prediction 9 25 - -
Bpe04g00232 1823 Gene3D - 764 1245 IPR036188 -
Bpe04g00232 1823 Gene3D - 870 1202 - -
Bpe04g00232 1823 Coils Coil 1263 1283 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00232 - - - mnt:21385577 1811.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00232 Bpe-Chr4:1566093 Bpe05g00169 Bpe-Chr5:5505727 5.22E-94 dispersed
Bpe10g00538 Bpe-Chr10:12443838 Bpe04g00232 Bpe-Chr4:1566093 6.26E-19 transposed
Bpe02g00363 Bpe-Chr2:2378671 Bpe04g00232 Bpe-Chr4:1566093 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1051 . Blo12g00895 Bda01g00502 . . Bpe04g00232 Bma04g00227 Bma01g02351 . . . . . . . . . Bhi04g00234 . . . . . . Cla08g01440 Cam08g1920 Cec08g1496 . Clacu08g1610 . Cre08g1396 . . . . . . . Cme03g01899 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004381 1 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21200 PF01593 Amino_oxidase 3.40E-106 CL0063 Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00232 Bpe_Chr04 FPKM 37.672573 39.7202 30.271864 30.405821 50.043915 48.631302 55.058475 28.100887 27.316355 29.271177