Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00237 ATGGTAAAGTTTGGATTTTCAGTTGCTCGAAAGGCCATAAGTTCAGAGTTGTGGCATGCCTGCGCTGGCCCGCTCGTTTCTTTGCCTCAGATGGGGAACCTCGTTTATTACTTCCCTCAAGGGCATAGCGAGCAGGTAGCAGTTTCAACTAAAAGAATTGCAACGTCACAGATTCCAAACTATCCACATCTTTCATCTCAGCTGATGTGCCAAGTTCAAAATATAACTTTACACGCAGATAAAGATACAGATGAGATATATGCTCAAATGTGCCTCCAACCAGTGAACTCTAACAAAGATGTTTTCCCCGTACTGGATTTTGGACTGCGGCCAGGCAAACATCCTAGCGAGTTTTTCTGCAAAACTTTGACTGCCAGTGATACTAGCACTCATGGTGGCTTCTCTGTTCCTCGAAGGGCAGCCGAAAAACTTTTTCCTCCATTGGATTTCACGATGCAACCACCAACTCAAGAACTTGTTGTACGAGATTTGCATGACAATACATGGACTTTTCGCCATATATACAGAGGCCAGCCAAAGAGGCACCTTCTGACAACTGGGTGGAGTTTGTTTGTAGGTGCAAAAAGGCTTAGAGCAGGTGACGCAGTTCTATTTATTAGGGATGAGAAATCGCAATTGCTTGTCGGAGTGAGGCGAGCCAATCGTCAGCAAACGACATTACCATCATCTGTTTTGTCTGCTGACAGTATGCATATCGGTGTGCTGGCTGCTGCAGCTCATGCTGCTGCTAATCATTGCCCATTTACAATATTCTACAACCCAAGGGCTTGCCCTTCCGAGTTTGTGATTCCTGTTGCTAAATATCGAAAATCTGTACATGGAACTCAACTTTCTGTTGGCATGAGGTTTGGAATGATGTTTGAGACAGAAGAATCAGGCAAGCGCAGATATATGGGTACGTTAGTTGGTATTAGCGACTTAGATCCGTTGAGGTGGCCAGGTTCCAAGTGGCGAAATCTTCAGGTGGAATGGGATGAGCCTGGCTGTTGTGATAAACAAAATAGAGTGAGTTCATGGGAAATCGAAACTCCGGAAAGTCTCTTTATTTTTCCTTCTCTAACTGCGGGTTTGAAACGACCATTACACAATGGATTTGTGGGCGAAACCGATTGGGGTAGTTTGGTTAAAAGGCCTCTTCTTCGAGGCCCTGAAAATGGGCATCAAAATTTTCCTTCTGCAGTTTCGAGTTTATATTCTGAACAGCTGATGAAGATGCTTGTCAGGCCTCAACTTGTGAATCTTCCTAGATCTTCTTCTCTGCCCCAAGACTCACTTTCCAAGGTCGACCAATTGTCAAATTGGAAGATCTTACAGCCTGTTACTAATCAAGAGACTAATCTCATCTCTTCGGAAAACATATCCTCACAAAATCAAACTAATCCTTCTCCTTGTCCCGATCAATCTGTCGTGCTAACTTCAATTTCATCATCAAACACTAACTTACAAGTAAAACATGGATCTCCTTTGAGTCTCGGTGGTCAAATATTGGCTGCTGTTAATGGTGACTGCACAAAAGTCAATTCTGAGCTCACAACAGTCCAGCTAGCCTCGACCAGGGAGTGTAGAGAAGAAAAACTAAGTTCTGGCCATGAAAATCTGCAGAGCTATGTTAAAAATTTGCCATCTCTGAGCCAAGGTCAAACTCCATTGCCATTCCAGGCTAATGCTTGGCCTCTCCAGCCTCCGCTAGAAACTTTGATGCACCATTCTCAACCAATTGATATACCTCAATATGACTTTTCTAGTCCAACCTCCTTGCTTCCTTCTTTAGATCCCAATGGATATGTACCTAACACTCCCTACCAACCTCATTCTGTAGTAATTAGGCCTTCAGTGCCTTCATCTATGGTGGGATTGCCAGACCAGTTTGGACCATTTTCAGAATCATTCAACTATCCTTTACCGTTGGTGGGTCATGAATCTTGGGATAACCTCAGGTTCTTGTCCCATGCAAACCAAATGACTTTATTCTCACATGAAGATCCGTCTAGTTTGAATTGTGCAACTAATTCTAATGGTCTGCGGGATTTGTCGGATGAAAGCAACAATCAAAATGGGATATATAGTTGTCCTAACATTGACGTTAGTAATGGTGGAAATACGGTTCTAGATCCATCTGTTTCAAGTGCAATTCTTGATGAATACTGCACATTAAAGGATCCTGAGTTTCAAAACCCCACTGATTGTCTTGTTGGGAATTTCGGGTCTAGCCAGGATGTGCAGTCTCAGATTACTTGTGCCAGTCTCGGAGATTCACAGGCTCAGACTCGCCAAAACATATCTGATAACTCGGGCGGTACATCATCATGCAATCTGGATTTTGATGAGAACAGCCTTTTGCAGAACAGCTCATGGAAACAAGTAGTTCCACCCATGAGAACTTATACAAAGGTTCAGAAGGCAGGATCAGTGGGCAGATCAATTGACGTGACTAGTTTTAAGAACTACGATGAGCTGTGCTCGGCAATAGAGTGCATGTTTGGATTAGAGGGGTTGTTGATCGACCCAAGAGGCTCGGGATGGAAATTAGTATTCGTAGATTATGAAAACGACGTACTTCTCGTAGGCGATGATCCCTGGGAAGAATTTGTAAGCTGTGTTAGGTGCATTAGAATTCTATCGCCTTCTGAAGTTCAACAGATGAGTGTAGTAGGTATGAAGCTCCTAAACAGTGCTATGATGCAAGGGGTTGGGTAA 2718 43.49 MVKFGFSVARKAISSELWHACAGPLVSLPQMGNLVYYFPQGHSEQVAVSTKRIATSQIPNYPHLSSQLMCQVQNITLHADKDTDEIYAQMCLQPVNSNKDVFPVLDFGLRPGKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDFTMQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDAVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANHCPFTIFYNPRACPSEFVIPVAKYRKSVHGTQLSVGMRFGMMFETEESGKRRYMGTLVGISDLDPLRWPGSKWRNLQVEWDEPGCCDKQNRVSSWEIETPESLFIFPSLTAGLKRPLHNGFVGETDWGSLVKRPLLRGPENGHQNFPSAVSSLYSEQLMKMLVRPQLVNLPRSSSLPQDSLSKVDQLSNWKILQPVTNQETNLISSENISSQNQTNPSPCPDQSVVLTSISSSNTNLQVKHGSPLSLGGQILAAVNGDCTKVNSELTTVQLASTRECREEKLSSGHENLQSYVKNLPSLSQGQTPLPFQANAWPLQPPLETLMHHSQPIDIPQYDFSSPTSLLPSLDPNGYVPNTPYQPHSVVIRPSVPSSMVGLPDQFGPFSESFNYPLPLVGHESWDNLRFLSHANQMTLFSHEDPSSLNCATNSNGLRDLSDESNNQNGIYSCPNIDVSNGGNTVLDPSVSSAILDEYCTLKDPEFQNPTDCLVGNFGSSQDVQSQITCASLGDSQAQTRQNISDNSGGTSSCNLDFDENSLLQNSSWKQVVPPMRTYTKVQKAGSVGRSIDVTSFKNYDELCSAIECMFGLEGLLIDPRGSGWKLVFVDYENDVLLVGDDPWEEFVSCVRCIRILSPSEVQQMSVVGMKLLNSAMMQGVG 905
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1599492 1603910 - Bpe014951.3 Bpe04g00237 102046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00237 905 SUPERFAMILY CAD & PB1 domains 792 879 - -
Bpe04g00237 905 Pfam Auxin response factor 245 328 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bpe04g00237 905 ProSiteProfiles B3 DNA-binding domain profile. 119 221 IPR003340 GO:0003677
Bpe04g00237 905 Gene3D - 797 889 - -
Bpe04g00237 905 Gene3D - 117 220 IPR015300 -
Bpe04g00237 905 ProSiteProfiles PB1 domain profile. 800 884 IPR000270 GO:0005515
Bpe04g00237 905 SUPERFAMILY DNA-binding pseudobarrel domain 107 248 IPR015300 -
Bpe04g00237 905 SMART B3_2 119 221 IPR003340 GO:0003677
Bpe04g00237 905 PANTHER AUXIN RESPONSE FACTOR 5 6 903 - -
Bpe04g00237 905 CDD B3_DNA 118 219 IPR003340 GO:0003677
Bpe04g00237 905 Gene3D - 283 355 - -
Bpe04g00237 905 Pfam B3 DNA binding domain 119 220 IPR003340 GO:0003677
Bpe04g00237 905 Pfam AUX/IAA family 799 887 IPR033389 -
Bpe04g00237 905 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 903 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g02169 Bpe-Chr2:22976543 Bpe04g00237 Bpe-Chr4:1599492 5.07E-15 dispersed
Bpe04g00237 Bpe-Chr4:1599492 Bpe08g00619 Bpe-Chr8:5031688 1.95E-35 dispersed
Bpe04g00237 Bpe-Chr4:1599492 Bpe11g01233 Bpe-Chr11:9210760 2.52E-28 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21201 PF02309 AUX_IAA 3.90E-09 CL0072 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00237 K14486 - csv:101216825 1279.62