Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00260 TTCATGGCTTCGATCAGAGCTAGGCCAAGTTTCCCCCACTTTCTCTCTTCTCTCTCGCGGCAAGTGTGCCAGCGCTCTGCGCTTTTTTCATCCTCGTCATCTTCCTCTCTCGAAGATCATTTCGAAGATGAAGGCGGAAATGAAAATACTAACGATTCCCTTGAGACCGAGCTTTCTTCAGAGGAAACCCTAGTCGCCGACAAATTACATGCCGTAATCAAGGACCACCATCGCAGAAACCCGACCGCCAATCCTAATATGCCTCCTTCTTCACCTGACCTGACTATTTCCGCTCTTTCACATGATTTCTCTAAAATCTCGGCCGTTCATTCCATATCTGCATCAATCGCCAGCCACGTGATTGAGAAATGCGGCGGAGTCCGCCATGGTATCCCTTTTCTTCAAGCCCTAGCGTTCTTCAATTGGATCACTACTCGCGAGGGGTTCGAGAACAATGTACGGCCATATAACGAGATGGTCGACCTAGCGGGAAAGGTAAGGCAATTTGATTTAGCTTGGCATCTGATTGACTTAATGAAAGCTAGAAACGTAGAAATTACAGTAGAAACGTTCTCAATTCTTGTGCGTCGGTATGTGAGAGCGGGATTTGCGGCAGAAGCTGTCCATGCCTTTAATCGTATGGAGGAATATGGTTGCAAACCCGATAAAATCGCATTCTCCATATTAATCAGTATCCTTTGTAAGAAGAGAAGGGCCAGCGAAGCTCAATCATTTTTTGATAGGTTAAAGGATAGGTTTAAGCTTGATGTGGTTGTGTACTCTAGCTTAGTTCATGGATGGTGTCGAGCTGGTAATATTTCAGAGGCAGAGAGGGTGTTCGGGGAGATGAAGATGGCTGGCATAAAACCGAATGTGTATACTTATAGTATAGTGATTGATGGATTGTGTAGATGTGGCCAAATTACACGAGCCCATGATGTTTTAGCAGAGATGATTGATGAAAATTGTAACCCTAATGCTGTAATATTCAACAATCTGATGAGGGTTCACGTGAAGGCGGGCAGAACTGAAAAGGTATTGCAAGTGTATAATCAGATGAAGAGGATAGGTTGCCCTGCGGACATAATTACTTATAATTTCCTTATTGATAGTCATTGCAGGGATGGCAACCTTGAAGCAGCTATGAAAGTCTTTTATTCGATGATTAAGAAAGACTGCACTCCAAATGCTTCAACTGTCAATCCTATATTCAGAAGCATTGCAAAACTGCGAGATGTAAATGGTGCTCACAGGTTAATTGGTAGAATGAAAGAATCAAAATGTAAACCCAATACAGTGACCTACAATATATTGATGCAGATGTTTGCCGAATCGAAATCAGCTGATATGGTTTTGAAGTTGAAGAAGGAAATGGATGAGAATGAGGTCGAGCCTAATGTGAATACTTATAGGATTTTGATTTCGCTGTATTGTGGGATGGGGCATTGGAACAATGCCTATAATTTCTTCAGGGAGATGATTGAGGAGAAATACTTAAAACCTGGCCAGCCTGTGTATGAGATGGTTCTCCAACAATTAAGGAAAGCAGGGCAGTTAAAAAAGCACGAGGAATTAGTGGAGAAGATGATTGAGAGAGGATTTGCTGCTCGGCCACTGTAG 1620 42.9 FMASIRARPSFPHFLSSLSRQVCQRSALFSSSSSSSLEDHFEDEGGNENTNDSLETELSSEETLVADKLHAVIKDHHRRNPTANPNMPPSSPDLTISALSHDFSKISAVHSISASIASHVIEKCGGVRHGIPFLQALAFFNWITTREGFENNVRPYNEMVDLAGKVRQFDLAWHLIDLMKARNVEITVETFSILVRRYVRAGFAAEAVHAFNRMEEYGCKPDKIAFSILISILCKKRRASEAQSFFDRLKDRFKLDVVVYSSLVHGWCRAGNISEAERVFGEMKMAGIKPNVYTYSIVIDGLCRCGQITRAHDVLAEMIDENCNPNAVIFNNLMRVHVKAGRTEKVLQVYNQMKRIGCPADIITYNFLIDSHCRDGNLEAAMKVFYSMIKKDCTPNASTVNPIFRSIAKLRDVNGAHRLIGRMKESKCKPNTVTYNILMQMFAESKSADMVLKLKKEMDENEVEPNVNTYRILISLYCGMGHWNNAYNFFREMIEEKYLKPGQPVYEMVLQQLRKAGQLKKHEELVEKMIERGFAARPL 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1719372 1720991 + Bpe014971.1 Bpe04g00260 102069

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00260 539 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 13 538 - -
Bpe04g00260 539 SUPERFAMILY TPR-like 188 496 IPR011990 GO:0005515
Bpe04g00260 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Bpe04g00260 539 Gene3D Tetratricopeptide repeat domain 459 532 IPR011990 GO:0005515
Bpe04g00260 539 TIGRFAM PPR: pentatricopeptide repeat domain 190 222 IPR002885 -
Bpe04g00260 539 TIGRFAM PPR: pentatricopeptide repeat domain 156 187 IPR002885 -
Bpe04g00260 539 TIGRFAM PPR: pentatricopeptide repeat domain 328 361 IPR002885 -
Bpe04g00260 539 TIGRFAM PPR: pentatricopeptide repeat domain 293 327 IPR002885 -
Bpe04g00260 539 TIGRFAM PPR: pentatricopeptide repeat domain 469 497 IPR002885 -
Bpe04g00260 539 TIGRFAM PPR: pentatricopeptide repeat domain 399 432 IPR002885 -
Bpe04g00260 539 TIGRFAM PPR: pentatricopeptide repeat domain 363 397 IPR002885 -
Bpe04g00260 539 TIGRFAM PPR: pentatricopeptide repeat domain 258 292 IPR002885 -
Bpe04g00260 539 TIGRFAM PPR: pentatricopeptide repeat domain 433 467 IPR002885 -
Bpe04g00260 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 466 500 IPR002885 -
Bpe04g00260 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 221 IPR002885 -
Bpe04g00260 539 PANTHER CHLOROPLAST RNA PROCESSING 1-LIKE PROTEIN 13 538 - -
Bpe04g00260 539 Pfam Pentacotripeptide-repeat region of PRORP 347 495 IPR033443 -
Bpe04g00260 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 431 465 IPR002885 -
Bpe04g00260 539 Pfam PPR repeat family 256 304 IPR002885 -
Bpe04g00260 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 395 IPR002885 -
Bpe04g00260 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Bpe04g00260 539 MobiDBLite consensus disorder prediction 34 59 - -
Bpe04g00260 539 Gene3D Tetratricopeptide repeat domain 101 236 IPR011990 GO:0005515
Bpe04g00260 539 Gene3D Tetratricopeptide repeat domain 237 337 IPR011990 GO:0005515
Bpe04g00260 539 Pfam PPR repeat 218 248 IPR002885 -
Bpe04g00260 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 252 IPR002885 -
Bpe04g00260 539 Gene3D Tetratricopeptide repeat domain 343 458 IPR011990 GO:0005515
Bpe04g00260 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
Bpe04g00260 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00260 - - - zju:107422771 791.186
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe04g00260 Bpe14g00404 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00260 Bpe-Chr4:1719372 Bpe14g00395 Bpe-Chr14:3696294 5.27E-06 dispersed
Bpe04g00260 Bpe-Chr4:1719372 Bpe14g00495 Bpe-Chr14:4411505 1.27E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g164 . Blo12g00873 . Bda03g00299 . Bpe04g00260 Bma04g00261 . . . . . Car01g01561 . . . . . . . . . . . . . . . . . . . Cone7ag1913 . . Lsi04g01777 . Chy04g00393 . . . . . . Bpe14g00404 . . . . . . . . . . . . . . . . . . Cla05g01599 Cam05g1710 Cec05g1710 Cco05g1767 Clacu05g1697 Cmu05g1586 Cre05g1705 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012790 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 0 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00260 Bpe_Chr04 FPKM 21.354166 20.540316 30.038553 25.948051 32.76548 28.930294 35.225861 23.791208 27.537342 22.100945