Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00264 ATGGCTCAAACAGAAGTGCTGGTTAAGATTGAGAGTGATGTCCGAGACCAGGAAACAGGTCTTTCACCAATCAATACAGATGTCTCGGCCGAAGAAGCTCAGTGGGAAAACAGAACAGGAAGTGTTCTGCCTAGAGACACCGAAGCTGGTGATCAAGGAAATAGCCAGTCGTCAGCAGATACAACTTTGCCATGTCACAAGGCAGCTGTTGGTAAAGTCACAATTCTTCAGATGGTAATTCTCGTTTCTACTGTAGCTGCTCTACTTTGCAGTCTTTTTGTCTCTAAGCTAAAGAGGCTTGAACTATGCGGTCTTCCATTATGGAAATGGGCATTAATGGCTTTTGTTCTTATCTCTGGACGCTTAGTTTCAAGTTGGATAGTCTGGGCAGTCGTGTATTTCATGGAGCGACATTACATTCTGAGAAAACAGGCTTTATATTTTATTTATGTGTCAAGGAACCCTGTTCGGAGCTGCCTCTGGTTATCAATTGTTTTGCTTGTGTGGGTCCTAGTAATAGATTGTAAGCTAGAAAAGGAGACCAAAGCTCGGGCTCTACCTTACATAACTAAGATCTTGGCTTGTCTTCTTGTCAGTTACTTTCTATGGCTTCTGAAAACACTACTTATTAAGGTTTTGGTCATGTCGTTCCATATAAAAGCCTTTTTCAAACAGCTTAGAAAAGCTCTGTTCAATCAGTACGTGATTAAGAGGCTCTCTCTCCCTCCGTCAAAAGAGAGGAAAAGACACTCGATGCAAAGAGTGGGGGAATGTTTTACATTGGGAAACAGTAGTGGGTTTTCGATGGAGCATGGTGATGGAGAATCTATGTCTAGTTTGTTGAATGAAGATAAGAAAAATATATCAGCTTGGATTATGAAGACGATGAAAGGAAGCATTCGGCAGAGAGACTTTCTTATACTGGATCAAGATTCAGACGCATCAATCAAGTCAGAAAAGGAGATTAGAACTGAAGAGGAAGCGAGAAGGACAGCGGAGTCTATATTCCGGCACGTCACTAAGCATAACGGGCGTAACGATGGATTTATTTTACTGGAGGACGTGAAAAATTATATGCAAGAACCCGTGGCAATGAAGGCTATGCAGATTTTTCAAGGAGCGGATACAGCTGAGAGAATTGGTTTATCTTCCTTCTGTGATTGGATGGTTGGTGCTTGCAGACAGAGGAAGGAACTTTCATCGTCTCTATCTGACACAAAATCAGCTGTCAATGACCTTCGCATCAAGTTCAATATATTCACGATTGTAATCATTATAATCTTCTGGTTCTTTATCTTGGGACTTCCCGCTCCTAGCATTCTTATCTATATGGCTGCACAGCTTGTTATGCTAGCGTTCATTTTCGGAAATACTTGCAAGACAGTCTTTATGGTAGTGAAGAAAATGAAGATATTAACTACGGTGTTTATCAGAGAAGATAACCAGAAGATTCTGTTTCCCAACAGCGTCCTTGCTACTAAACCCATTACTAATTACCATCGTAGTAAGAACGTCAGAGACGTAGTTGATATCACAGTGGACGTCTCGACTCCAACGGAAAAGCTCCGATCAATGACCCAACAAATTCAAAGGTTTGAACTTGAACTAGCCTTTTTCTTCTTTTAA 1626 41.21 MAQTEVLVKIESDVRDQETGLSPINTDVSAEEAQWENRTGSVLPRDTEAGDQGNSQSSADTTLPCHKAAVGKVTILQMVILVSTVAALLCSLFVSKLKRLELCGLPLWKWALMAFVLISGRLVSSWIVWAVVYFMERHYILRKQALYFIYVSRNPVRSCLWLSIVLLVWVLVIDCKLEKETKARALPYITKILACLLVSYFLWLLKTLLIKVLVMSFHIKAFFKQLRKALFNQYVIKRLSLPPSKERKRHSMQRVGECFTLGNSSGFSMEHGDGESMSSLLNEDKKNISAWIMKTMKGSIRQRDFLILDQDSDASIKSEKEIRTEEEARRTAESIFRHVTKHNGRNDGFILLEDVKNYMQEPVAMKAMQIFQGADTAERIGLSSFCDWMVGACRQRKELSSSLSDTKSAVNDLRIKFNIFTIVIIIIFWFFILGLPAPSILIYMAAQLVMLAFIFGNTCKTVFMVVKKMKILTTVFIREDNQKILFPNSVLATKPITNYHRSKNVRDVVDITVDVSTPTEKLRSMTQQIQRFELELAFFFF 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1727619 1729842 + Bpe014974.1 Bpe04g00264 102073

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00264 541 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 53 531 - -
Bpe04g00264 541 MobiDBLite consensus disorder prediction 31 60 - -
Bpe04g00264 541 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 53 531 IPR016688 -
Bpe04g00264 541 Pfam Mechanosensitive ion channel 459 532 IPR006685 GO:0016020|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00264 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - jre:109012553 345.895
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00264 Bpe-Chr4:1727619 Bpe07g00704 Bpe-Chr7:13646352 2.55E-114 dispersed
Bpe15g00798 Bpe-Chr15:18202656 Bpe04g00264 Bpe-Chr4:1727619 4.09E-112 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g152 . . . Bda03g00302 . Bpe04g00264 Bma04g00266 . . . . Cma09g00081 . . . Cpe06g00045 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed10g2110 . Cmo09g00080 . . . Car09g00070 . . Bhi09g01887 Tan01g3346 Cmetu01g0289 . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018082 1 0 0 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00264 Bpe_Chr04 FPKM 43.20726 40.470417 0.878537 0.579393 6.343744 5.127281 4.850425 0.0 0.0 0.0