Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00279 CACGAAAAGAAAGAGAAGAAGTTCCTTACAGTAGCACCCTTCGAATGCGCATGGCTGAAGGATTTAAGATTTCGAGAAGCAGGTCGGGGCTGTGTGGCTTTTGAAGCTTTTGCCCACAATGATGTTACATTGGTATTCAGGGAAAATGTGGGAAGTCAGCACTACCACTACAAAAGAGACAGTAGCCCTCACTATACTGTTATATTGGGCAGCCACAGGAATCGCCGTCTGAAGATTGAGGTGAATGGAAAAACTGTAGTTGATGTCGAAGGTATTGGACTTTGCTGTGCTTCTGCTTTTCAGAGCTATTGGATTTGCATCTATGATGGGTTAATAAGTGTTGGTAAAGGGAAATACCCTTTTCAAAATATGGTATTTCAGTGGCTGGATTCAAATCCCAACTGTAGTGTTCGGTATATCGGGCTAAGTAGTTGGGACAAGCATGTCGGTTATAGAAATGTCTATGTATTACCACTTACACAAAATCATGTTTCTCTATGGAAGCATGTAGATAGCAGTGAGTTTGAAGGTGAGGACGATGGGGAAATGGAATTGGAAGATGAAGGCAGAAATTATGACAATTGGGGGCTGGAACATTTCCTTGAGAGTTGGGAATTGGCAGATATGTTTTTCACCGTTGGTTCAGAAGAAAGAATTGTACCTGCTCATAAGGCAATCTTGGTAGCTTCTGGTAATTTTCCATTAGAGGATGTTATAAAGCTTCAGGGAGTGAGCTATCCAGTTCTTCATGCTCTCCTTCAATATATATATACTGGTCAAACCCAGATTTCAGAGTCGCAAATCCTTTGTTTGCGAGATCTGGGTTTACAATTTGAGGTGGTGGCATTGGTAAATCAGTGCGAGGAAACCATTGAAAGATTGAAACTGAATAAAACGCTGTCATTAGACTCAAGTAAGAATGTAGAACTATCTTATCCGAGGGCTCAGCCTCATTGCTGTACTATTGCTCCCGCCCCCTATGAACTTCAGCTCAAACAATTGTTCTTAACTGGCAAGCTCAGTGACTTAGCTATACATATTTGTGATGTTGGTTTCATTGCTCACGTCCATAAAATTATTCTTAGTTTATGGAGTGTGCCTTTTGCAAAGATGTTCACGAATGGAATGAGGGAAACAATATCGTCTGAGGTCTCTTTAGTGGATGTATCCCCAAAAGCTTTCAAGTTGATGCTTGAGTTCATGTATAGTGGGGAGCTCAGTGAGGAAGTCATTTCTAAGGATTCAAGTGTATTATTGCTCCAACTTCTTTTATTGGCCGATCAATATGGAGTTACATTTCTTCATCGAGAATGCTGCAAAATTCTTTTGGAACATCTCTCAGAGGACCTGGTGTGTCCAATTCTCCAAGTTGTGTCATCAATACCGTCCTGTAGACTGATTGAAGAAACATGTGAAAGGAAGTTTGCAATGCATTTTGATTACTGTACAACTGCAAGTCTTGACTTCGTCATGTTAGACGAGACAGCTTTTGGCAATATCATTCAGGTAGGCCTCAACCTATGCTATTATTTAACGGTGACATCAGAGGAAAAAGTTCTGAATGCAATCTTAACATGGGGGAATAAAACAGAGGAATTATGCGTGTGGGAGGTGGTGGATGAACAGATGTTGTATTCAACTCCTGAAATGTTTTTTGGGGAGAGGCTTCATTCTGTTCATGAATTGTTCCGATGTGTAAGATTTCCGTTACTGCCATATGCATTGCTGGAGAAGGTGCGTATTTATGTAAATCACATAACAAACAGATTTACTGACAAATCTGCTATTTGGGGGGGTGTTCATCGACGGGAATTAACTTTTGTTTTTCACCCATTATGTAGTGTGAGATTTCAATATAGGCGGTCTAGCTACAAGGAGCTCATGTACATTTGTGATGGAGACAGCAATGGAGTTCTGTTCTTTGCAGGCACATCATATGGACAGCATCAATGGGTCAATCCTGTTCTTTCCAAGAGGATCACAATCACTGCCAGCAGCCCCCCTTCGAGGTTCACTGATCCGAAGGTTTTGGTCTCGAGAACTTACCAGGGCACGTCTTTTGCCGGACCCCGCGTTGAAGATGGACGGAATTGTTCGTGGTGGATGATTGATATTGGAAAAGATCGTCAGCTCATGTGCAACTACTACACGCTGAGACAAGATGGGTCCAGAGCATATATTAGACATTGGAATCTCCAGCAGGGGTCTTTGGATGGGAAAACTTGGACAAAATTGAGATCACATGAAAACGACCAAACGATGTGCAAATCAGGTCAGTTTGCGTCATGGCCAATAACGGGACCAAACGCTCTGCTTCCATTCAGATTCTTCAGGGTTGTTCTTTCAGGCCCCACCACTGATGTTTCAAACCCTTGGAACTTCTGCATTTGCTACTTTGAACTCTACGGCTACTTCCGC 2418 42.18 HEKKEKKFLTVAPFECAWLKDLRFREAGRGCVAFEAFAHNDVTLVFRENVGSQHYHYKRDSSPHYTVILGSHRNRRLKIEVNGKTVVDVEGIGLCCASAFQSYWICIYDGLISVGKGKYPFQNMVFQWLDSNPNCSVRYIGLSSWDKHVGYRNVYVLPLTQNHVSLWKHVDSSEFEGEDDGEMELEDEGRNYDNWGLEHFLESWELADMFFTVGSEERIVPAHKAILVASGNFPLEDVIKLQGVSYPVLHALLQYIYTGQTQISESQILCLRDLGLQFEVVALVNQCEETIERLKLNKTLSLDSSKNVELSYPRAQPHCCTIAPAPYELQLKQLFLTGKLSDLAIHICDVGFIAHVHKIILSLWSVPFAKMFTNGMRETISSEVSLVDVSPKAFKLMLEFMYSGELSEEVISKDSSVLLLQLLLLADQYGVTFLHRECCKILLEHLSEDLVCPILQVVSSIPSCRLIEETCERKFAMHFDYCTTASLDFVMLDETAFGNIIQVGLNLCYYLTVTSEEKVLNAILTWGNKTEELCVWEVVDEQMLYSTPEMFFGERLHSVHELFRCVRFPLLPYALLEKVRIYVNHITNRFTDKSAIWGGVHRRELTFVFHPLCSVRFQYRRSSYKELMYICDGDSNGVLFFAGTSYGQHQWVNPVLSKRITITASSPPSRFTDPKVLVSRTYQGTSFAGPRVEDGRNCSWWMIDIGKDRQLMCNYYTLRQDGSRAYIRHWNLQQGSLDGKTWTKLRSHENDQTMCKSGQFASWPITGPNALLPFRFFRVVLSGPTTDVSNPWNFCICYFELYGYFR 806
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1791905 1796472 - Bpe025596 Bpe04g00279 102088

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00279 806 Gene3D - 644 804 - -
Bpe04g00279 806 Pfam Farnesoic acid 0-methyl transferase 52 149 IPR022041 -
Bpe04g00279 806 SUPERFAMILY Galactose-binding domain-like 648 805 IPR008979 -
Bpe04g00279 806 SMART BTB_4 207 295 IPR000210 GO:0005515
Bpe04g00279 806 SMART BTB_4 341 446 IPR000210 GO:0005515
Bpe04g00279 806 Gene3D - 478 592 - -
Bpe04g00279 806 CDD BTB_POZ_ZBTB_KLHL-like 340 407 - -
Bpe04g00279 806 SUPERFAMILY POZ domain 329 444 IPR011333 -
Bpe04g00279 806 Gene3D Potassium Channel Kv1.1; Chain A 193 295 IPR011333 -
Bpe04g00279 806 PANTHER OS05G0345500 PROTEIN 2 806 - -
Bpe04g00279 806 CDD BTB_POZ_ZBTB_KLHL-like 206 271 - -
Bpe04g00279 806 Pfam F5/8 type C domain 662 783 IPR000421 -
Bpe04g00279 806 Gene3D Potassium Channel Kv1.1; Chain A 313 477 IPR011333 -
Bpe04g00279 806 SUPERFAMILY POZ domain 197 291 IPR011333 -
Bpe04g00279 806 Pfam BTB/POZ domain 331 445 IPR000210 GO:0005515
Bpe04g00279 806 Pfam BTB/POZ domain 198 292 IPR000210 GO:0005515
Bpe04g00279 806 ProSiteProfiles BTB domain profile. 207 265 IPR000210 GO:0005515
Bpe04g00279 806 ProSiteProfiles BTB domain profile. 341 410 IPR000210 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00279 - - - pper:18788493 1173.69
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00311 Bpe04g00279 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00311 Bpe-Chr2:2046511 Bpe04g00279 Bpe-Chr4:1791905 8.92E-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g100 Blo01g01634 Blo12g00855 . Bda03g00318 Bpe02g00311 Bpe04g00279 Bma04g00286 . . . . Cma09g00057 . . . Cpe06g00025 . . . . . . . . . . . . . . . Cone4ag2017 Cone7ag1933 . . Lsi04g01803 Csa04g02697 . . . . . . . . . . Sed01g2438 . Cmo09g00058 . . . Car09g00049 . . Bhi09g02894 Tan01g5102 Cmetu07g0710 . Hepe01g2337 Mch11g0535 . Cla11g01820 Cam11g1886 Cec11g1911 Cco11g1918 Clacu11g2050 Cmu11g1855 Cre11g2260 . . Chy07g00388 Cme07g00059
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008391 1 2 2 1 1 0 1 1 0 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 0 1 2 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21203 PF00754 F5_F8_type_C 2.30E-08 CL0202 Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00279 Bpe_Chr04 FPKM 3.904834 4.763214 1.330629 1.470554 1.515189 1.009423 1.07618 6.198195 6.453588 5.534616