Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00283 ATGGAAGAGATGTCAGAGACGACGATGAAGAAGAAGAAGAAAAAGGGTCGCCCCTCTCTTCTAGATCTCCAAAAGCGTTTCATCAAACAGCAAAATTTGGATCAACAGCTCTCTAGTTCTTTCAATTTAAGCTCCATTTCAACCACGCGATCCAGTCGACGGAACCCTAACGCGCAGCCGGAGCCGCACCGCATCGCCGTCGACGATGATGATGACGAGCGAACAGAGAAGAAGCATAAGCTCCTACTCGGTTTGAATTCTCGTCCACATTATCCGACATTGTCGTCTTATTCTTTGTCGCGTAATTTGGTTGCAAACGGTTCTAATTCGAGTGCGGGTGGCGAGGATCCCGAGGCTGCATTCAAGAGGCGTAAGATTGATGCCATTCATCTCGCTTCAGATGAGATGGATGAAAAGCTTTTGAAAGCGACAGACAGGGTACATGGAACAGAGGTTGGTCCCACGACACCTTTGCCGGACAAAAAGTTGCTGTTATTCATCTTGGACAGGCTTCAAAAAAAGGACACGCATGGGGTATTCTCCGAACCAGTGGATGCAGATGAGCTTCCTGATTATTTTGACACCATTGATAATCCAATGGATTTTGGCACAGTGAGAAAGAAATTAGACAAAGGATCTTACGCCAATTTGGAAGAATTTGAGAAAGACATTTTCTTGATATGTTCAAATGCAATGCAATATAATGGTCCGGATACCATATTTTTCCGTCAGGCACGATCTATACAAGAACTTGCAAAAAAGGATTTCCACAATCTTCGGCAAGACAGTGATGATGAAGCTGAACCTGAACCAGAAGCTGCAAAGAGAGGCAGACCACCTGCAAAAAACCCAAAGAAGCCACATGGCAGACCTTCATTAGAGTGTGTTGGGAGTCGGACTGAGCTATCCTCTGGTGCCACTGTTGTTTCAGGTGGAAATTGTGCCGCTGGGTTTAATAACATTTACAACTTAAGAAGAGGAAATCATACTTCCAAGTTCCACCATGTTGATACTGTAGCAAGGGGATCCCATGGGTCTCAAAACAGTGAAACTGTGACAAATTGGTTGTCTGAATGGCAGAATGAATTCCCAGCTTCAGTTTTGAGGAGTGTGCTCAAGTGTGGGAAAAATCATCAAATTTCTGTTGATGAGAACAGGCGTGATACGTATAAACAGTCATTGACATCTGTTGATCGATTACCTTTAATGTTTGGCGAACCGAGGCAACTACTAGCTGTAGGTCTCGATGCAGAGCACAGTTATGCACGAAGCATTGCTCGATTCTCAGCTGATCTAGGGCCTGTCGTCTGGAAGGTTGCTTCAAAGAAAATAATGGATATTCTGCCGGTTGGACTTGACTTTGGTCCAGGGTGGATAGGACATAACGAGAGACCAAAGCAGTTGATGTCCTCATCAACTAAGGGGGACATGTTTTCAAACGGCTCTCAAGCAATTGACAATAGCCTAACAGCAGGTACATCTGGCTTCGACCAGGGTATTTCAAACAGATCTTCTTTGCGAAAGGATGTGGATATTATTAGGGAATTGGATTTGCAGAATGAGACGATGTTAACCCATAAAGGTGATGATAGGATGGCACCTGCCTCTTGTTTTCAGATTGAGAGACCCCAATATCACCGTGACTCAAATGGCTTAAATGGTGGTTTTGGATCTGATTATTCAACCGAAATGCAGGTGAAGAGATTTTTGGGCACATCACATTCAGGTAATGTAGCTGCTCCTGCACACGTGGGGTCCAGTGGAGAAGCATCTGGTGCTGCAATAATTCCAGCATCTGGATTCCTGTCAATTGTCCTCTAA 1821 44.59 MEEMSETTMKKKKKKGRPSLLDLQKRFIKQQNLDQQLSSSFNLSSISTTRSSRRNPNAQPEPHRIAVDDDDDERTEKKHKLLLGLNSRPHYPTLSSYSLSRNLVANGSNSSAGGEDPEAAFKRRKIDAIHLASDEMDEKLLKATDRVHGTEVGPTTPLPDKKLLLFILDRLQKKDTHGVFSEPVDADELPDYFDTIDNPMDFGTVRKKLDKGSYANLEEFEKDIFLICSNAMQYNGPDTIFFRQARSIQELAKKDFHNLRQDSDDEAEPEPEAAKRGRPPAKNPKKPHGRPSLECVGSRTELSSGATVVSGGNCAAGFNNIYNLRRGNHTSKFHHVDTVARGSHGSQNSETVTNWLSEWQNEFPASVLRSVLKCGKNHQISVDENRRDTYKQSLTSVDRLPLMFGEPRQLLAVGLDAEHSYARSIARFSADLGPVVWKVASKKIMDILPVGLDFGPGWIGHNERPKQLMSSSTKGDMFSNGSQAIDNSLTAGTSGFDQGISNRSSLRKDVDIIRELDLQNETMLTHKGDDRMAPASCFQIERPQYHRDSNGLNGGFGSDYSTEMQVKRFLGTSHSGNVAAPAHVGSSGEASGAAIIPASGFLSIVL 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1813579 1817399 - Bpe014986.1 Bpe04g00283 102092

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00283 606 Pfam Bromodomain 167 246 IPR001487 GO:0005515
Bpe04g00283 606 SMART bromo_6 153 261 IPR001487 GO:0005515
Bpe04g00283 606 MobiDBLite consensus disorder prediction 1 74 - -
Bpe04g00283 606 PANTHER BROMODOMAIN CONTAINING PROTEIN 7 570 - -
Bpe04g00283 606 Gene3D - 158 276 IPR036427 GO:0005515
Bpe04g00283 606 PANTHER BROMODOMAIN-CONTAINING PROTEIN 9-LIKE 7 570 - -
Bpe04g00283 606 PRINTS Bromodomain signature 205 223 IPR001487 GO:0005515
Bpe04g00283 606 PRINTS Bromodomain signature 175 188 IPR001487 GO:0005515
Bpe04g00283 606 PRINTS Bromodomain signature 189 205 IPR001487 GO:0005515
Bpe04g00283 606 PRINTS Bromodomain signature 223 242 IPR001487 GO:0005515
Bpe04g00283 606 ProSiteProfiles Bromodomain profile. 172 242 IPR001487 GO:0005515
Bpe04g00283 606 MobiDBLite consensus disorder prediction 257 279 - -
Bpe04g00283 606 ProSitePatterns Bromodomain signature. 177 234 IPR018359 -
Bpe04g00283 606 CDD Bromodomain 160 256 - -
Bpe04g00283 606 SUPERFAMILY Bromodomain 153 265 IPR036427 GO:0005515
Bpe04g00283 606 MobiDBLite consensus disorder prediction 257 296 - -
Bpe04g00283 606 MobiDBLite consensus disorder prediction 25 58 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00283 K22184 BRD9; bromodomain-containing protein 9 - qsu:112016187 511.916
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00283 Bpe-Chr4:1813579 Bpe12g00149 Bpe-Chr12:1086321 1.96E-118 dispersed
Bpe03g00424 Bpe-Chr3:22622300 Bpe04g00283 Bpe-Chr4:1813579 2.07E-09 transposed
Bpe15g00784 Bpe-Chr15:18097867 Bpe04g00283 Bpe-Chr4:1813579 1.41E-106 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g88 . . . Bda03g00322 . Bpe04g00283 Bma04g00289 . . . Cma01g02019 . Car01g01587 . . . . . . . . . . . . . . . . . . Cone4ag2023 Cone7ag1940 . . Lsi04g01811 Csa04g02708 . . . . . . . . . . Sed13g2199 Cmo01g02077 . . . . . . Cpe02g00031 Bhi09g02875 Tan01g5115 Cmetu07g1520 . Hepe01g2345 Mch11g0053 . Cla11g01827 Cam11g1894 Cec11g1919 Cco11g1927 Clacu11g2058 Cmu11g1863 Cre11g2270 . . Chy07g00397 Cme07g00050
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011763 1 1 0 1 1 0 1 0 0 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00283 Bpe_Chr04 FPKM 0.483143 0.0 0.0 0.0 0.593621 0.471938 0.0 0.102149 0.068716 0.176807