Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00284 AAGAAAGCTGCGGCAAAACCCGCGAGGAAACCAAGCAAAAAGGCAGCGAAAGATCCAGACAAACCTAAGAGGCCCTCCAGTGCCTTCTTCGTTTTCATGGAAGAGTTTAGGAAGAAGTTTAACGAAGAGAATCCAAATAATAAATCAGTATCTGCTGTTGGAAAGGCTGCTGGACAGAAATGGAAATCTATGTCTGAAACTGATAAAGCTCCTTATGTTTCAAAGGCAGAGAAAAGAAAGCTAGATTATGAAAAGGAAATGAGGGCCTATAACAAGAAGCAGGCTGCAGGTCCCAAGTCTGCGGAGGAGGATGAATCTGAGAAATCAGTGTCTGAGGTGAATGACGATGATGATGGGGAAGATGGCAGTGAAGAGGTTAGTTGA 384 43.75 KKAAAKPARKPSKKAAKDPDKPKRPSSAFFVFMEEFRKKFNEENPNNKSVSAVGKAAGQKWKSMSETDKAPYVSKAEKRKLDYEKEMRAYNKKQAAGPKSAEEDESEKSVSEVNDDDDGEDGSEEVS 127
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1818371 1819323 + Bpe014987.1 Bpe04g00284 102093

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00284 127 Coils Coil 73 93 - -
Bpe04g00284 127 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 22 91 IPR009071 -
Bpe04g00284 127 Pfam HMG (high mobility group) box 22 91 IPR009071 -
Bpe04g00284 127 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 126 IPR031061 -
Bpe04g00284 127 MobiDBLite consensus disorder prediction 108 127 - -
Bpe04g00284 127 SUPERFAMILY HMG-box 8 96 IPR036910 -
Bpe04g00284 127 PANTHER HIGH MOBILITY GROUP B PROTEIN 2-RELATED 1 126 - -
Bpe04g00284 127 CDD HMGB-UBF_HMG-box 22 88 - -
Bpe04g00284 127 Gene3D High mobility group box domain 5 110 IPR036910 -
Bpe04g00284 127 SMART hmgende2 21 92 IPR009071 -
Bpe04g00284 127 MobiDBLite consensus disorder prediction 71 107 - -
Bpe04g00284 127 MobiDBLite consensus disorder prediction 1 26 - -
Bpe04g00284 127 MobiDBLite consensus disorder prediction 40 127 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00284 K25507 HMGBP; high mobility group B protein, plant - csv:101203891 148.673
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00306 Bpe04g00284 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00284 Bpe-Chr4:1818371 Bpe05g00682 Bpe-Chr5:20451148 1.62E-09 dispersed
Bpe03g01004 Bpe-Chr3:29541605 Bpe04g00284 Bpe-Chr4:1818371 2.20E-36 transposed
Bpe04g01276 Bpe-Chr4:18762985 Bpe04g00284 Bpe-Chr4:1818371 6.32E-33 transposed
Bpe12g00222 Bpe-Chr12:1853050 Bpe04g00284 Bpe-Chr4:1818371 3.32E-23 transposed
Bpe02g00306 Bpe-Chr2:2012615 Bpe04g00284 Bpe-Chr4:1818371 1.52E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g85 . Blo12g00851 . Bda03g00323 Bpe02g00306 Bpe04g00284 Bma04g00290 . . . Cma01g02021 Cma09g00049 Car01g01588 . . Cpe06g00019 . . . . . . . . . . . . . . . Cone4ag2024 Cone7ag1941 Cone17ag1458 . Lsi04g01812 Csa04g02709 . . . . Bda11g00975 . . . . . Sed01g2431 Cmo01g02078 Cmo09g00052 . . . Car09g00041 . . Bhi09g02874 Tan01g5116 Cmetu06g2583 . . Mch11g0052 . Cla11g01828 Cam11g1895 Cec11g1920 Cco11g1929 Clacu11g2059 Cmu11g1864 Cre11g2271 . . Chy07g00398 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002005 3 3 2 2 2 0 4 1 0 2 2 1 3 2 2 3 0 5 2 1 2 2 2 2 2 2 2 2 1 2 59
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21205 PF00505 HMG_box 1.90E-23 CL0114 Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00284 Bpe_Chr04 FPKM 0.697114 0.574935 0.982378 0.561392 1.912651 1.636127 1.334552 1.038111 0.950266 0.971969