Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00288 ATGACTCGTCCTTTTAGGCTTCTAACCGGTGGTGCGAACTCGCCGGCGAGCGACGACCATTGGCCTATGCCTGATCCGAACGACTCCGACATCGTAATCGTACTCGCCGCTCTTCTCTGTGCCTTAATTTGCGTTCTGGGTCTCATAGCCGTCGCTCGTTGCACCTGGATTCGCCACGTCTCAGGCAGCAGTGGCTCAGCTCCCGCCTCCACCAACCGTAATCTTCCGGCGCCCACATCAAACAAAGGGCTTAAGAAGAAAATTTTAAGGTCTCTCCCAAAAGTCACTTTTACGGCAGAGTCCGACTCTCATCTATCAGACTGCGCGATCTGTCTTGCCGATTTCGTCACCGGAGACGAAATCAGAGTTCTTCCGCAGTGCGGCCATGTCTTCCACGTGGGTTGCATCGATACGTGGTTCGGATCACATTCCTCCTGCCCATCTTGCCGAAAGGTTTTGGCGGTATCTAGGTGCCAGAAGTGCGGCGATTTCTCTGCGAGCTCAAGCACTGGTTCGGCAAGTGAAGCCAGATTGAAGGAGACGCAAGGCAATGCGAATAGGTTCTTACCCTAG 573 53.93 MTRPFRLLTGGANSPASDDHWPMPDPNDSDIVIVLAALLCALICVLGLIAVARCTWIRHVSGSSGSAPASTNRNLPAPTSNKGLKKKILRSLPKVTFTAESDSHLSDCAICLADFVTGDEIRVLPQCGHVFHVGCIDTWFGSHSSCPSCRKVLAVSRCQKCGDFSASSSTGSASEARLKETQGNANRFLP 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1847097 1847669 + Bpe014991.1 Bpe04g00288 102097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00288 190 MobiDBLite consensus disorder prediction 62 79 - -
Bpe04g00288 190 MobiDBLite consensus disorder prediction 164 190 - -
Bpe04g00288 190 SUPERFAMILY RING/U-box 90 155 - -
Bpe04g00288 190 SMART FANCL_C_2 104 158 - -
Bpe04g00288 190 Pfam Ring finger domain 107 150 IPR001841 -
Bpe04g00288 190 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 184 - -
Bpe04g00288 190 CDD RING-H2_EL5_like 107 150 - -
Bpe04g00288 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 155 IPR013083 -
Bpe04g00288 190 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Bpe04g00288 190 MobiDBLite consensus disorder prediction 1 22 - -
Bpe04g00288 190 SMART ring_2 108 149 IPR001841 -
Bpe04g00288 190 MobiDBLite consensus disorder prediction 62 81 - -
Bpe04g00288 190 PANTHER RING-H2 FINGER PROTEIN ATL8 1 184 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00288 Bpe-Chr4:1847097 Bpe04g01771 Bpe-Chr4:23295964 1.93E-33 dispersed
Bpe02g00297 Bpe-Chr2:1974887 Bpe04g00288 Bpe-Chr4:1847097 6.91E-90 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00288 - - tcc:18591745 236.498