Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00311 ATGGAAGAATATGGCGGCGGCCGCGGACGTGCTCCTCCCACTTACAGAGGAGTGAGAAAGAGAAAATGGGGCAAATGGGTGTCCGAAATTCGAGAGCCGGGGAAGAAAACACGAATATGGCTCGGGAGCTATGAGGCTCCGGAAATGGCAGCAGCTGCCTACGATGTGGCTGCGTTACACCTTAAAGGACCTGGTACCCACCTCAACTTTCCTGAATTGGTGGGGAGTCTACCTCGACCAGCCACTTCTAGGCCGGAGGATATTCAACTGGCGGCACAAGAGGCGGCGTTGAGATTCAGAAAGCCAGCAAGTGTTTTGCCGGCTTCATCAGTGGGTGTTTCCGGGGGAGAGAGAACCATTCCGGCAGTGAGGGTGGGGCTCTCGCCGAGCCAAATTCAGGCCATTACCGAGTGGCCGTTGGATTCTCCAACAATGTGGATGCAAATGTGTGAATACGAGGAGTATAACAATAGTATAGAGTGGGAAGAAGAGACGAGGCTGTATGATCAGTCTCCCTCCATATGGGATTATTAG 534 53.0 MEEYGGGRGRAPPTYRGVRKRKWGKWVSEIREPGKKTRIWLGSYEAPEMAAAAYDVAALHLKGPGTHLNFPELVGSLPRPATSRPEDIQLAAQEAALRFRKPASVLPASSVGVSGGERTIPAVRVGLSPSQIQAITEWPLDSPTMWMQMCEYEEYNNSIEWEEETRLYDQSPSIWDY 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1991813 1992346 + Bpe015009.1 Bpe04g00311 102120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00311 177 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF022 14 176 - -
Bpe04g00311 177 Pfam AP2 domain 13 63 IPR001471 GO:0003700|GO:0006355
Bpe04g00311 177 CDD AP2 15 73 IPR001471 GO:0003700|GO:0006355
Bpe04g00311 177 Gene3D AP2/ERF domain 14 73 IPR036955 GO:0003700|GO:0006355
Bpe04g00311 177 SUPERFAMILY DNA-binding domain 14 72 IPR016177 GO:0003677
Bpe04g00311 177 PRINTS Ethylene responsive element binding protein signature 37 53 IPR001471 GO:0003700|GO:0006355
Bpe04g00311 177 PRINTS Ethylene responsive element binding protein signature 15 26 IPR001471 GO:0003700|GO:0006355
Bpe04g00311 177 SMART rav1_2 14 77 IPR001471 GO:0003700|GO:0006355
Bpe04g00311 177 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 176 - -
Bpe04g00311 177 ProSiteProfiles AP2/ERF domain profile. 14 71 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00311 Bpe-Chr4:1991813 Bpe01g00552 Bpe-Chr1:3582125 5.94E-35 dispersed
Bpe02g00270 Bpe-Chr2:1826101 Bpe04g00311 Bpe-Chr4:1991813 2.66E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21207 PF00847 AP2 6.10E-13 CL0081 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00311 - - zju:107421431 199.134