Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00320 ATGGATTCCATAGATGCGATCGAGGAGCTATCGCAGCTCGCTCAGTCTATGAGGCAAGCTGCCGCTTTGCTTGCCGACGAAGATATTGAAGAGAATTCCAGTTCTGGTGGTTCCTCTCGCAGGTCTTCCACTTTCCTCAACGTTGTTGCTCTGGGAAATGTTGGTGCCGGTAAATCTGCAGTTTTGAATAGTTTGATTGGACACCCTGTTTTGCCAACTGGTGAAAATGGTGCTACCCGTGCTCCCATAAGCATTGATTTACAGAGGGATGGTTCTTTGAGTAGCAAATCAATTATTTTGCAGATTGACAACAAATCACAGCAAGTTTCTGCAAGTGCTTTACGACATTCTCTTCAAGACAGACTGAGCAAAGGTGGTTCTGGAAAGAGTCGGGATGAAATATATTTAAAGCTTCGCACCAATACAGCGCCCACCCTGAAACTGATTGATTTACCTGGGCTTGATCAACGGATAATAGATGATTCTATGGTCAGTGACTATGCTGAACACAATGATGCCATTTTACTAGTTATAGTACCTGCAGCTCAAGCTCCTGAGATTGCTTCATCTCGAGCTCTCAGGGCTGCAAAGGAATATGATGCAGAAGGTACCAGAACAATTGGAATAATCAGCAAAATAGATCAAGCTGCTTCAGATCCGAAATCACTTGCTGCAGTTCAGGCTATCCTTTTGAATAAAGGGCCATCACGCGCATCAGACATCCCATGGGTTGCTTTGATTGGTCAATCAGTTTCGATTGCTTCTGCCCAGTCTGGGTCTGTAGGCTCTGAAAGTTCCTTAGAAACTGCATGGAGGGCAGAAACAGAGAGTCTCAAGTCCATATTAACTGGAGCACCACATAATAAGTTAGGTAGAATAGCATTGGTGGATGCTCTGGCACAACAGATACGAAATCGTATGAAAGTGCGCGTTCCAAACCTTCTCTCTGGATTGCAAGGAAAGTCTCAAATAGTTAAAGATGAGCTAGTAAGGCTTGGTGAACAAATGGTCCATGGTTCGGAGGGGACTAGAGCCTTAGCTTTGGAACTTTGCCGTGAATTCGAGGATAAGTTTCTCCAACATATTGGGACTGGTGAGGGTGCTGGTTGGAAAATTGTTGCTAGCTTCGAGGGAAATTTTCCGAATAGAATCAAGCAGCTACCTTTAGATAGACACTTTGACATTAACAATGTGAAACGGATTGTGCTAGAAGCTGACGGTTATCAACCATACCTCATATCACCTGAAAAGGGTTTGAGATCTTTGATAAAAGGTGTTTTGGAGCTTGCCAAAGAACCATCGCGACTCTGTGTTGATGAGGTGCACCGGGTCCTGGTAGATATAGTGGCTGCTTCTGCAAGTTCTACACCAGGTCTTGGAAGATATCCTCCTTTTAAAAGAGAGGTTGTGGCCATAGCAAGTGCTGCATTAGACAGTTTTAAAACTGAAGCAAAGAAGATGGTAGTTGCATTAGTGGATATGGAGCGAGCTTTTGTGCCCCCTCAGCATTTTATCCGTTTGGTACAAAGGAGAATGGAGAGACAAAGGCGAGAGGAGGAAATGAAACGATCTTCAAAAAAAGGTCCGGAGGCTGAACAGGGGATACTGAAAAGAGCAACTAGTCCCCAAACTGATGCTCAACAACCTGGCGGAAGCTTGAAATCAATGAAAGATAAATCTGGAAAAGAAGAGAAGGAAGCACCAGAAAGTTCTGGTTTGAAGACTGCTGGTCCTGAAGGAGAAATAACGGCAGGTTATCTATTGAAGAAAAGTGCAAAAACTAATGGTTGGAGCCGCCGCTGGTTTGTTTTGAATGAAAAAACCGGAAAGCTTGGTTACACTAAAAAAGAAGAGGAGAGACATTTTCGTGGTGTCATCACTCTAGAGGAATGTGCGATAGAAGAAGGATTAGATGAAGAGGAGCCTCCTCCATCAAAGAGTTCGAAGGATAAAAAGGCCAGTGCTAATGGACCCTCAGGGAAAACGCCTAATCTTGTCTTCAAGATTACCAGCAAAGTTCCATATAAAACTGTTTTGAAAGCGCACAGTGCTGTTGTCTTGAAGGCTGAGAGCATGACCGATAAGGTTGAATGGATAAATAAGCTACGCAACATTATTCAACCCTCTAAAGGAGGACAAACCAGAGGTGCATCTGAAGGCGGTGTTTCCATGCGGCAAAGTCTTTCTGACGGTTCTCTGGATTCGATGGTTAGAAGGCCTGCTGATCCCGAAGAAGAACTGCGATGGATGTCTCAAGAAGTGCGGGGTTATGTGGAAGCAGTTTTGAGCAGTTTGGCTGCTAATGTTCCTAAAGCAGTTGTTCTCTGCCAAGTCGAGAAAGCCAAGGAAGACATGCTTAATCAGTTGTACAGCTCAATCAGTGCTCAAAGCACTGCGAGGATTGAAGAGCTACTTCAAGAGGACCAGAATGCAAGGCGTCGAAGGGAGAAATTCCAGAAACAGTCTTCTCTCCTCTCTAAACTAACTCGTCAACTTAGCATTCATGACAACCGTGCAGCAGCTGCCGCCTCCAGCTGGTCTGAAGGCAGTGAAGCAGAGAGCAGTCCAAGAACTAGTGGTGCTCTAGCTGGGGATGATTGGAGATCGGCTTTTGATGCTGCTGCCAACGGTCCCACCGACTACCAGAGGTCTTCATCCAATGGTCACAGTCGACACTATAGTGATCCGGCACAAAATGGTGAGGTCAACTCTGGTGCAAACTCCGGCAGCCGCCGGACTCCTAACCGATTGCCGCCGCCTCCACCACAGTCCACATCCGGCTCCAAATATTTTTAG 2796 45.53 MDSIDAIEELSQLAQSMRQAAALLADEDIEENSSSGGSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLPTGENGATRAPISIDLQRDGSLSSKSIILQIDNKSQQVSASALRHSLQDRLSKGGSGKSRDEIYLKLRTNTAPTLKLIDLPGLDQRIIDDSMVSDYAEHNDAILLVIVPAAQAPEIASSRALRAAKEYDAEGTRTIGIISKIDQAASDPKSLAAVQAILLNKGPSRASDIPWVALIGQSVSIASAQSGSVGSESSLETAWRAETESLKSILTGAPHNKLGRIALVDALAQQIRNRMKVRVPNLLSGLQGKSQIVKDELVRLGEQMVHGSEGTRALALELCREFEDKFLQHIGTGEGAGWKIVASFEGNFPNRIKQLPLDRHFDINNVKRIVLEADGYQPYLISPEKGLRSLIKGVLELAKEPSRLCVDEVHRVLVDIVAASASSTPGLGRYPPFKREVVAIASAALDSFKTEAKKMVVALVDMERAFVPPQHFIRLVQRRMERQRREEEMKRSSKKGPEAEQGILKRATSPQTDAQQPGGSLKSMKDKSGKEEKEAPESSGLKTAGPEGEITAGYLLKKSAKTNGWSRRWFVLNEKTGKLGYTKKEEERHFRGVITLEECAIEEGLDEEEPPPSKSSKDKKASANGPSGKTPNLVFKITSKVPYKTVLKAHSAVVLKAESMTDKVEWINKLRNIIQPSKGGQTRGASEGGVSMRQSLSDGSLDSMVRRPADPEEELRWMSQEVRGYVEAVLSSLAANVPKAVVLCQVEKAKEDMLNQLYSSISAQSTARIEELLQEDQNARRRREKFQKQSSLLSKLTRQLSIHDNRAAAAASSWSEGSEAESSPRTSGALAGDDWRSAFDAAANGPTDYQRSSSNGHSRHYSDPAQNGEVNSGANSGSRRTPNRLPPPPPQSTSGSKYF 931
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2043307 2054339 - Bpe015018.1 Bpe04g00320 102129

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00320 931 Coils Coil 801 821 - -
Bpe04g00320 931 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 71 80 IPR019762 -
Bpe04g00320 931 MobiDBLite consensus disorder prediction 649 664 - -
Bpe04g00320 931 MobiDBLite consensus disorder prediction 556 570 - -
Bpe04g00320 931 Gene3D Dynamin, middle domain 340 548 - -
Bpe04g00320 931 SMART PH_update 581 709 IPR001849 -
Bpe04g00320 931 ProSiteProfiles GED domain profile. 747 840 IPR020850 -
Bpe04g00320 931 MobiDBLite consensus disorder prediction 878 913 - -
Bpe04g00320 931 Gene3D - 571 708 IPR011993 -
Bpe04g00320 931 Gene3D Dynamin, middle domain 709 815 - -
Bpe04g00320 931 MobiDBLite consensus disorder prediction 843 857 - -
Bpe04g00320 931 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 42 312 IPR030381 GO:0005525
Bpe04g00320 931 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 321 IPR027417 -
Bpe04g00320 931 MobiDBLite consensus disorder prediction 709 740 - -
Bpe04g00320 931 MobiDBLite consensus disorder prediction 515 533 - -
Bpe04g00320 931 MobiDBLite consensus disorder prediction 843 931 - -
Bpe04g00320 931 MobiDBLite consensus disorder prediction 537 554 - -
Bpe04g00320 931 PANTHER DYNAMIN-2A 8 859 - -
Bpe04g00320 931 PANTHER DYNAMIN 8 859 IPR022812 -
Bpe04g00320 931 Pfam Dynamin GTPase effector domain 745 827 IPR003130 GO:0003924|GO:0005525
Bpe04g00320 931 SUPERFAMILY PH domain-like 581 707 - -
Bpe04g00320 931 Pfam Dynamin central region 266 503 IPR000375 -
Bpe04g00320 931 PRINTS Dynamin signature 70 87 IPR022812 -
Bpe04g00320 931 PRINTS Dynamin signature 182 200 IPR022812 -
Bpe04g00320 931 PRINTS Dynamin signature 201 217 IPR022812 -
Bpe04g00320 931 PRINTS Dynamin signature 45 63 IPR022812 -
Bpe04g00320 931 ProSiteProfiles PH domain profile. 580 707 IPR001849 -
Bpe04g00320 931 MobiDBLite consensus disorder prediction 709 733 - -
Bpe04g00320 931 MobiDBLite consensus disorder prediction 515 579 - -
Bpe04g00320 931 Gene3D - 42 327 IPR027417 -
Bpe04g00320 931 SMART GED_2 742 835 IPR003130 GO:0003924|GO:0005525
Bpe04g00320 931 Coils Coil 7 27 - -
Bpe04g00320 931 SMART dynamin_3 17 244 IPR001401 GO:0003924|GO:0005525
Bpe04g00320 931 MobiDBLite consensus disorder prediction 633 664 - -
Bpe04g00320 931 Pfam Dynamin family 48 212 IPR045063 -
Bpe04g00320 931 CDD DLP_1 48 312 IPR001401 GO:0003924|GO:0005525
Bpe04g00320 931 Pfam PH domain 585 706 IPR001849 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00320 K01528 DNM1_3; dynamin 1/3 [EC:3.6.5.5] - csv:101220753 1464.9
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00260 Bpe04g00320 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00320 Bpe-Chr4:2043307 Bpe13g00885 Bpe-Chr13:14955188 1.85E-07 dispersed
Bpe02g00260 Bpe-Chr2:1754665 Bpe04g00320 Bpe-Chr4:2043307 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1716 Blo01g01682 Blo12g00812 . Bda03g00360 Bpe02g00260 Bpe04g00320 Bma04g00337 Bma01g02448 . . Cma01g00877 Cma09g01291 Car01g00802 . Sed03g0698 Cpe06g00975 . Bhi04g02550 Tan11g0043 Cmetu03g0129 . Hepe02g3468 . Lcy10g2361 Cla08g00152 Cam08g0148 Cec08g0103 Cco08g0213 . Cmu08g0149 Cre08g0132 Cone4ag1154 . . . . . . Cme09g00107 . . Bda11g00922 . . . . . Sed11g1774 Cmo01g00920 Cmo09g01249 . . . Car09g01106 . Cpe02g00986 Bhi06g00143 Tan10g1858 Cmetu09g1009 . . . . Cla11g00799 Cam11g0836 Cec11g0820 Cco11g0822 Clacu11g1022 Cmu11g0885 Cre11g1279 Lsi08g00154 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001593 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 2 2 2 2 4 3 2 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00320 Bpe_Chr04 FPKM 5.929063 7.832751 4.020597 5.471378 9.842945 11.109119 10.227665 2.106128 1.636346 2.195046