Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00325 CAAATTATTCACATTCCTGAAAATCCTCATATTCCCCCTGACCATCAGCCAACTGTGAACGTTTTCGCCGCTGTTGTTGAGCCCAAGCTAGTGAATGTTCTTGTAAGGCGCTTAAATCAGATAGCACCTTTGGAAAGTCTACGCCATGTGAAGAGAGTTCAGAAGAAATGTATTGATGGAACAACTCAGTTAGCTGTGATCTTATGTCAAGCTAATGAAAATGATTCTCACCCAGATAGCATACCTCACAATGTACGAGAGCTTATGAGTTGCCATCAGTTGAGTGCTTTTATTACAAAAGTTTGCAAAGAAGCAGCGTCATCAAAAGAACAGTGGGAAGAGCAATGCAAGCTTTGGCCAACGTCCTATCATCCACCAACCTACAAGATTGATGGGGTTGCAGGATTTAGTGAAGAGGACCGACAATCTGTTATCAGCTTTATGAAATTTGCTGTTGATTTGGCAAAATATGGTGATGATTTGGTAGTCAATGCTGCAGTAATAGTGGATCCTTCAGTTAAACAGATTATAGCAAGTGCATGTGATGAAACTTATACTCGAAATACACCTGGAAGGAAACCGTGCTTCAATAATTGCTCCCGTTTCGATAACTCTGAGTTGCCATCGAATGGTTGTCTCAAAGAACTGAATCAGAATCATAGTGGTGTATCTTGTCTGTATCCTTGGCAGTGGGATAAACAACCATCACATGTGGACAATTTTCATTATTGGCATCCCTTGAGACACGCTGCAATGGTTGCTATTGAATCGTCTGCTGCTAGGGACAGAAAACTATTTCCTGGTTATGGAGAAACAGTTGAATTAAGCCAGACAGAGGCCTCATCTTGCGGTTCTTCCTCAAAACGACAAAAGATCAATCTGAAAAACGCTGAGAATGATGAGAATATTACTTCTCCTGATGAAAGTGCTTCTTCCCTTCTGTCCAGGCCTTACCTGTGCACTGGCTATGACATGTACTTGGTATGGGAGCCATGTGTTATGTGTGCAATGGGACTTGTCCACCAGAGAATGAGAAGAATATTTTATGCCTATCCGAACCCAAATGCGGGTGCATTGGGCAGTGTTTACAGACTGCAGGGAGAAAAGAGCTTGAACCATCATTATGCTGTTTTCAGGGTGCTACTG 1146 42.23 QIIHIPENPHIPPDHQPTVNVFAAVVEPKLVNVLVRRLNQIAPLESLRHVKRVQKKCIDGTTQLAVILCQANENDSHPDSIPHNVRELMSCHQLSAFITKVCKEAASSKEQWEEQCKLWPTSYHPPTYKIDGVAGFSEEDRQSVISFMKFAVDLAKYGDDLVVNAAVIVDPSVKQIIASACDETYTRNTPGRKPCFNNCSRFDNSELPSNGCLKELNQNHSGVSCLYPWQWDKQPSHVDNFHYWHPLRHAAMVAIESSAARDRKLFPGYGETVELSQTEASSCGSSSKRQKINLKNAENDENITSPDESASSLLSRPYLCTGYDMYLVWEPCVMCAMGLVHQRMRRIFYAYPNPNAGALGSVYRLQGEKSLNHHYAVFRVLL 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2063974 2068036 - Bpe025607 Bpe04g00325 102134

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00325 382 PANTHER INACTIVE TRNA-SPECIFIC ADENOSINE DEAMINASE-LIKE PROTEIN 3-RELATED 18 381 - -
Bpe04g00325 382 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 146 350 IPR002125 -
Bpe04g00325 382 Gene3D Cytidine Deaminase, domain 2 133 382 - -
Bpe04g00325 382 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 18 381 - -
Bpe04g00325 382 SUPERFAMILY Cytidine deaminase-like 117 379 IPR016193 GO:0003824
Bpe04g00325 382 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 242 362 IPR002125 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00325 K15442 TAD3, ADAT3; tRNA-specific adenosine deaminase 3 - qsu:112016311 489.96
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1754 . . . Bda03g00363 . Bpe04g00325 Bma04g00341 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007713 2 3 1 1 1 1 0 1 1 1 1 1 1 0 1 1 1 2 1 1 1 1 1 1 2 0 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00325 Bpe_Chr04 FPKM 26.43285 28.957182 12.825372 13.251185 44.833397 40.240677 45.259167 4.292035 4.03647 3.618093