Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00326 ATGATGAAATTATCTCGCCTGTTATCCTCAAGAAAGCAGGTGTTCGAAAGTGTGAAACTTAAGGATGCTGGTGATATTTGTGATAGTTTTAGGTTCCAACCTTTCTCATCACGGCCTAACTTATCAACTTCTAGTCAGAAATATACTTCTAAAGCTCCTGGGGATCAGACTGCAAGAATACTTGCTCCTTATTCTGTTTATAAGGGCAAAGCAGCTCTCTCATTGGATCCTCTTCTCCCTACTTTCACAAAATTGGAGTCGGGAAATCAGGTTGTGGATCGACGTGGTGCAATGATTTTGCGGTTCTTACCTGCTATTGGTGAACGTAAGTATGACTGGGAGAAGAGGCAGGTGTTTGCATTGTCGCCGACTGAAATTGGTACTTTATTGAACTTGGGTCCCAAAGATTCATGTGAATTCTTTCACGATCCTTCAATATTATCAAGTAAAGCTGGTCAAGTGAAGAAAAGCTTATCAATTAAGTCCATTGGAGATGGTACCGGGTACTTCGTAAATTTGAGTGTTGTGAACAACCTTCTAAAAACCAAAGATAATTTTACTGTCCCTGTTACTTCTGGTGAATTTGCTGTAATGAAGACAGCATGCAGTTTTGCATTGCCGCACATCATTGGTTGGGACAGGTTGACAAAGTTTCCCGGAAGCTCGGAAAGTTTTTCATCATCAAAGACAAATACCAAATTGTTTGGCTCAGAATGGGAAAAATGA 726 40.36 MMKLSRLLSSRKQVFESVKLKDAGDICDSFRFQPFSSRPNLSTSSQKYTSKAPGDQTARILAPYSVYKGKAALSLDPLLPTFTKLESGNQVVDRRGAMILRFLPAIGERKYDWEKRQVFALSPTEIGTLLNLGPKDSCEFFHDPSILSSKAGQVKKSLSIKSIGDGTGYFVNLSVVNNLLKTKDNFTVPVTSGEFAVMKTACSFALPHIIGWDRLTKFPGSSESFSSSKTNTKLFGSEWEK 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2069687 2073003 - Bpe015022.1 Bpe04g00326 102135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00326 241 Pfam Whirly transcription factor 66 200 IPR013742 GO:0003697|GO:0006355|GO:0006952
Bpe04g00326 241 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 1 241 IPR013742 GO:0003697|GO:0006355|GO:0006952
Bpe04g00326 241 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 1 241 - -
Bpe04g00326 241 Gene3D Transcriptional Coactivator Pc4; Chain A 51 219 IPR009044 GO:0003677|GO:0006355
Bpe04g00326 241 SUPERFAMILY ssDNA-binding transcriptional regulator domain 59 231 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00326 Bpe-Chr4:2069687 Bpe13g01428 Bpe-Chr13:19571690 1.06E-54 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21208 PF08536 Whirly 1.40E-55 CL0609 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00326 - - qsu:112016313 298.516