Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00333 ATGGGGAATAGGAGCAAGAAAGATCCAGTTGAAGACTTGTCTTCTTCTTCTTCATTGTATTCATCAAGCTCTGATGAAACAACCCGTTCTTCTAGGAAGCGTCATTCGTCTCGTAGAGACAGCAGGAAGAAAGACAGAAAGAGGGAGAAAAAAACTGGTGATAAGGAGAGGAAGAGGAGAGAGAGGGATAAACACAGAGAGCGAAAGAGAAGGAAACTGAAAAGAAGGGGAAAAAGAGAATCGATCGATTCTGATTCTGGGTATTCGAGTGAAGGTGACTCCCTGGGCGAAATGAGTCGAATTAAACCTGAACTTCTTAAAATGATTGATGATGGTCAAGCGGTTGATATCAAGGGAGTATCAGAGAAGCGTCTCATGAAGTACCTAAAAAAGTTGTTTGTCTCATTAAATCTGAAAGAAAATGGAGACAGGGTGTTCTTATTGCCATCTAATGCCCGCCCAACATTAGAGCTAATTGGACCCCTCATTGAAATAGAAGAATCAACAGAGAAAAGGCATGATCCATCTGTATCTGCAAAAGATGAGCAGTTAGGACCAGTGAACAAGGGAGATTTGCACATAATGGATGACACTGACAGAGTTGGAGACTTTTCATGTCAAGAAAATACTGATTTTGCTCCTAAGAAAAGAGTTCTTGGTCCTGAAATGCCTTCAGCTGAGGTACTTGCTGCTGCAGCAAAACTAACCGAAGCACAAGCTGAGCTAAGAGATGCTGAGTTGGATGAAGATATTGGATTATTTATAGGACCTCCACCGCCTGCTGTAGTTGCTGAAGCTGAATCAGCAAATGAGGCTGAGCGATTTGAAGAGGTTACAAGAATCATGGCAGTTGACTCAGTTGATTCTCCCTATGATGTCGTGGGGGCCAATCGAAACATGTCCACTGAAAATATTAAAAAAAGATATTGGAAGATTTCCCTTTTGGTGCACCCAGATAAATGTTCCCACCCTCAAGCTCATCAAGCCTTCATTAAATTGAACAAAGCTTTTAAGGAATTACAAGATCCCATAAAGCGAGAAGCTCTCGATGAGAAAATCAAACTCAAGGAAGAAGAAGAAGCATTCAAAATAGAATTGCGAGCAATGCGCGAGGCAGCACAATGGAGAAGATTGCAAGCATTCCTCTCTCTCATGAAAAAAGTACACTTGATTGGTATCTTGATTGCGTATTTAGAAGTATATTCAGTTATTCTTGGAATCATAGTCTATACTTCTCTGATTTCGGGTATATCAATGGAAGGTGATGATGAGCTATTGGCTGAGTTTGATGTTAAAGCACCACCAAAAAGAGAAGAATGGATGACAACTCTACCTCCCGAGAGGCAGCCTGGTGTGAGCATGCAATCGTCCAAATTTAGCAGGGGTTCAAAAGAAGGTCGTGGCGATACAAGCATTTGGACCGACACTCCATTAGATAGAGCCCAGAAAGCGAAGATGAATTACTTAGAAGCCTATAATGAAGCAACAGCACTTGCTTCAAAGGCAGAAGAAAAGAAAGCTTCTGATGCAGATTTAGTGGATAAGTACAATAAAGAGAAACGATCGAAATCATTGGTACAGAAGCATCGTGAGGAGGGTAAAAGTTCGAAGAAAAAATCAGAGATAAAACGAGAGAAAGAAGAGTGGGCTGGGCAACATCCATGGAAGCCATGGGATCGTGAGAAAGACTTGGCTGCAGGGAGGCAATCTGTTAAGCTTGATTCAGAGAACATGGGTCAGGGTCTAACTTCAAGGTTTTCTTCAGGTTCTTTTCAGAGAAACTTCCTATAA 1791 41.6 MGNRSKKDPVEDLSSSSSLYSSSSDETTRSSRKRHSSRRDSRKKDRKREKKTGDKERKRRERDKHRERKRRKLKRRGKRESIDSDSGYSSEGDSLGEMSRIKPELLKMIDDGQAVDIKGVSEKRLMKYLKKLFVSLNLKENGDRVFLLPSNARPTLELIGPLIEIEESTEKRHDPSVSAKDEQLGPVNKGDLHIMDDTDRVGDFSCQENTDFAPKKRVLGPEMPSAEVLAAAAKLTEAQAELRDAELDEDIGLFIGPPPPAVVAEAESANEAERFEEVTRIMAVDSVDSPYDVVGANRNMSTENIKKRYWKISLLVHPDKCSHPQAHQAFIKLNKAFKELQDPIKREALDEKIKLKEEEEAFKIELRAMREAAQWRRLQAFLSLMKKVHLIGILIAYLEVYSVILGIIVYTSLISGISMEGDDELLAEFDVKAPPKREEWMTTLPPERQPGVSMQSSKFSRGSKEGRGDTSIWTDTPLDRAQKAKMNYLEAYNEATALASKAEEKKASDADLVDKYNKEKRSKSLVQKHREEGKSSKKKSEIKREKEEWAGQHPWKPWDREKDLAAGRQSVKLDSENMGQGLTSRFSSGSFQRNFL 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2118146 2127532 + Bpe015029.2 Bpe04g00333 102142

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00333 596 MobiDBLite consensus disorder prediction 62 77 - -
Bpe04g00333 596 ProSiteProfiles dnaJ domain profile. 289 353 IPR001623 -
Bpe04g00333 596 Pfam DnaJ domain 290 350 IPR001623 -
Bpe04g00333 596 MobiDBLite consensus disorder prediction 500 596 - -
Bpe04g00333 596 MobiDBLite consensus disorder prediction 441 476 - -
Bpe04g00333 596 MobiDBLite consensus disorder prediction 500 569 - -
Bpe04g00333 596 Pfam Protein of unknown function (DUF3752) 434 587 IPR022226 -
Bpe04g00333 596 Coils Coil 345 372 - -
Bpe04g00333 596 SMART dnaj_3 288 345 IPR001623 -
Bpe04g00333 596 MobiDBLite consensus disorder prediction 12 26 - -
Bpe04g00333 596 Gene3D DnaJ domain 275 372 IPR036869 -
Bpe04g00333 596 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 414 596 - -
Bpe04g00333 596 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 6 379 - -
Bpe04g00333 596 Coils Coil 55 75 - -
Bpe04g00333 596 MobiDBLite consensus disorder prediction 169 189 - -
Bpe04g00333 596 CDD DnaJ 290 342 IPR001623 -
Bpe04g00333 596 Coils Coil 228 248 - -
Bpe04g00333 596 PRINTS DnaJ domain signature 291 309 IPR001623 -
Bpe04g00333 596 PRINTS DnaJ domain signature 309 324 IPR001623 -
Bpe04g00333 596 PRINTS DnaJ domain signature 325 345 IPR001623 -
Bpe04g00333 596 SUPERFAMILY Chaperone J-domain 252 347 IPR036869 -
Bpe04g00333 596 MobiDBLite consensus disorder prediction 47 61 - -
Bpe04g00333 596 MobiDBLite consensus disorder prediction 1 96 - -
Bpe04g00333 596 MobiDBLite consensus disorder prediction 573 596 - -
Bpe04g00333 596 Coils Coil 478 505 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00333 - - - tcc:18592947 568.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00333 Bpe-Chr4:2118146 Bpe08g01255 Bpe-Chr8:14060453 8.70E-12 dispersed
Bpe04g00333 Bpe-Chr4:2118146 Bpe08g00563 Bpe-Chr8:3935643 7.67E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1411 . . . Bda03g00370 . Bpe04g00333 Bma04g00348 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g00995 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011130 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 2 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00333 Bpe_Chr04 FPKM 13.345946 16.189993 15.26383 14.119101 10.402219 9.340254 9.930169 11.253863 12.787195 15.811902