Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00340 ATGGGAAAATCCGGTGGAGAAAAAGCTACTTCTAAAAGCACCAACAAACATCAGGCAATCACCGCAACTGTTACAAAAGGTTGGGTCTTAGCATTACCAACAAAGGACTGTAATCAAGGTAATAAGAATCATACATATCCAATTTCAACTCTTGAGGATGGTCAAGTTGAATCATGCTGCTTATGTTGCTCGGCCAAAGAAAGTTGCAAAACTGTTCGAAACAGAACAAAATTAATGAACGTTTTAGTAGAAAGAGGGAAATCTCAGGAAGTGCAGTCTATTTTTGACAGTTTAAATGAAGGAGGACATAAACCGTCACTGGTGACATATACTATCCTTTTGGCTGCCTTGACCAATCAGAAGCGCTACAAGTCCATACATTCGGTTTTGTCCATGGTAGAAGAAAATGACATGAAACCAGACTCTGTATTTTACAATGCTGTTATTAATGCTTTCTCTGAAGCTGGTAATGTAGATGAAGCCATGGAGACCTTTAAAAAGATGAAGGAGAGTGGACTAAAACCTACTACAAGCACTTTTAACACTTTGATTAAAGGTTTTGGTATTTCTGGTCGAGCTGAAGAAACTCTAAAGCTATTAGAGGTGATGTCTCAAGAGGAAAATACAAAACCAAATCTCCGAACTTACAATGCGCTAGTAAGAGCATGGTGTAAAAACAACAATATTTCTGAGGCATGGAATGTGGTTTATACGATGGCTAGTCAAGGAATGAAGCCAGATGCCATAACTTACAACACAATAGTAACAGCCTATGCTCAGAAAGGGGAAACAGAACAGGCTGAAAGGATCATTTTAGAGATGGAGAAAAAGGGTTTGGAGCCCAATGAGAGAACTTTTAGCATCATAATTAGTGGATATTGTAAAGAAGGTAAACCCAAGGAGGCTATTAGGTTCGTATACCGGATGAAGGATTTCGTTGTACGTCCTAATCTGGTTGTTTTTAACTCTCTCATCAAAGGCTTTTTGGAAACTATGGACCGAGAAGGGGTTGACGAGGTTTTGGCTTTGATGAAAGAATTTGGAGTGAGACCAGATGTAATCACATTTAGCACTATCATGAATTCATGGAGCAAAGCTGGCTTCATGGTGAAATGCAGGGAAATATTTAATGAAATGATGGAAGTTGGAATTGAACCAGATGCACATGCATATAGCATTCTTGCTAAAGGGTACGTATGCTCACAAGAACCTGAAAAGGCCGAAGAATTGTTGAGCACTATCATTAAATCTGGAGTTCGGCCAAACGTAGTGTTTTTTACAACCATTATAAGCGGTTGGTGCAGTGCGGGAAATATGGATTCTGCCGTCAGGGTTTTCGATAAAATGTGCGAGTACAAGGTTTATCCCAACTTGAAGACTTTTGAGACATTGATATGGGGGTATGGAGAAGCAAAGCAGCCATGGAGATCGGAAGAAATCCTCGAAGTTATGGAAGAATTTAATGTTCAGCCAGAGAAATCCACCGTCTTGTTAGTCGCAGAAGCTTGGCGAGGAGTGGGAATGACGAAAGAAGCAAAGAGAATACTCGATAACCGGACGAGTGGAGAAGCAATGCATCAAACCGAGAAAGAAGAAAATAAACAAATACAAAGCGTAAATAAAATGTATCAAAAGCGACATGTTAATTCATCTCCGTCCAGTATTCTTCAGGTACCATCTACGTCGAGCAAACGAAACAGCATGGCAATGAGGGATTCGGATTTTTCTTCGGAGAGTTCATCAGTTTCCTCGAAATCTCTTTATCTATCTCACGGTTGCAAGTTTGGAGAAAGGTTGCCAATTGTGTGTAGGAGGCAGTCGCAGTCGCAAGGACAGATTGGTATGTTTAGTCAACTTACACCTTCGTATACAGCTGTGTTCTTGAATTAA 1890 40.11 MGKSGGEKATSKSTNKHQAITATVTKGWVLALPTKDCNQGNKNHTYPISTLEDGQVESCCLCCSAKESCKTVRNRTKLMNVLVERGKSQEVQSIFDSLNEGGHKPSLVTYTILLAALTNQKRYKSIHSVLSMVEENDMKPDSVFYNAVINAFSEAGNVDEAMETFKKMKESGLKPTTSTFNTLIKGFGISGRAEETLKLLEVMSQEENTKPNLRTYNALVRAWCKNNNISEAWNVVYTMASQGMKPDAITYNTIVTAYAQKGETEQAERIILEMEKKGLEPNERTFSIIISGYCKEGKPKEAIRFVYRMKDFVVRPNLVVFNSLIKGFLETMDREGVDEVLALMKEFGVRPDVITFSTIMNSWSKAGFMVKCREIFNEMMEVGIEPDAHAYSILAKGYVCSQEPEKAEELLSTIIKSGVRPNVVFFTTIISGWCSAGNMDSAVRVFDKMCEYKVYPNLKTFETLIWGYGEAKQPWRSEEILEVMEEFNVQPEKSTVLLVAEAWRGVGMTKEAKRILDNRTSGEAMHQTEKEENKQIQSVNKMYQKRHVNSSPSSILQVPSTSSKRNSMAMRDSDFSSESSSVSSKSLYLSHGCKFGERLPIVCRRQSQSQGQIGMFSQLTPSYTAVFLN 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2151465 2154098 - Bpe015035.1 Bpe04g00340 102149

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00340 629 TIGRFAM PPR: pentatricopeptide repeat domain 285 317 IPR002885 -
Bpe04g00340 629 TIGRFAM PPR: pentatricopeptide repeat domain 249 283 IPR002885 -
Bpe04g00340 629 TIGRFAM PPR: pentatricopeptide repeat domain 390 423 IPR002885 -
Bpe04g00340 629 TIGRFAM PPR: pentatricopeptide repeat domain 319 353 IPR002885 -
Bpe04g00340 629 TIGRFAM PPR: pentatricopeptide repeat domain 144 176 IPR002885 -
Bpe04g00340 629 TIGRFAM PPR: pentatricopeptide repeat domain 179 212 IPR002885 -
Bpe04g00340 629 TIGRFAM PPR: pentatricopeptide repeat domain 354 388 IPR002885 -
Bpe04g00340 629 TIGRFAM PPR: pentatricopeptide repeat domain 215 248 IPR002885 -
Bpe04g00340 629 TIGRFAM PPR: pentatricopeptide repeat domain 426 457 IPR002885 -
Bpe04g00340 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Bpe04g00340 629 Pfam PPR repeat 210 239 IPR002885 -
Bpe04g00340 629 Pfam PPR repeat 418 449 IPR002885 -
Bpe04g00340 629 Gene3D Tetratricopeptide repeat domain 402 571 IPR011990 GO:0005515
Bpe04g00340 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Bpe04g00340 629 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 629 - -
Bpe04g00340 629 Pfam PPR repeat family 246 295 IPR002885 -
Bpe04g00340 629 Pfam PPR repeat family 140 187 IPR002885 -
Bpe04g00340 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
Bpe04g00340 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Bpe04g00340 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 175 IPR002885 -
Bpe04g00340 629 Gene3D Tetratricopeptide repeat domain 57 190 IPR011990 GO:0005515
Bpe04g00340 629 Gene3D Tetratricopeptide repeat domain 191 295 IPR011990 GO:0005515
Bpe04g00340 629 Gene3D Tetratricopeptide repeat domain 296 401 IPR011990 GO:0005515
Bpe04g00340 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 457 491 IPR002885 -
Bpe04g00340 629 Pfam Pentatricopeptide repeat domain 309 362 IPR002885 -
Bpe04g00340 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Bpe04g00340 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 210 IPR002885 -
Bpe04g00340 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 422 456 IPR002885 -
Bpe04g00340 629 Pfam PPR repeat 460 489 IPR002885 -
Bpe04g00340 629 MobiDBLite consensus disorder prediction 547 580 - -
Bpe04g00340 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Bpe04g00340 629 PANTHER OS01G0228400 PROTEIN 1 629 - -
Bpe04g00340 629 SUPERFAMILY HCP-like 144 488 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00340 K17710 PTCD1; pentatricopeptide repeat domain-containing protein 1 - qsu:111987770 852.047
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00340 Bpe-Chr4:2151465 Bpe08g00476 Bpe-Chr8:3100586 0 dispersed
Bpe12g00128 Bpe-Chr12:910941 Bpe04g00340 Bpe-Chr4:2151465 3.75E-18 dispersed
Bpe12g00147 Bpe-Chr12:1065730 Bpe04g00340 Bpe-Chr4:2151465 2.08E-11 dispersed
Bpe04g00340 Bpe-Chr4:2151465 Bpe02g01164 Bpe-Chr2:15300561 1.15E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g333 . Blo12g00798 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0612 . . Chy04g00266 . . . . . . Bpe04g00340 . . Sed13g2120 . . . . . . . . Bhi09g02416 Tan01g3776 Cmetu04g2828 . Hepe01g2116 Mch11g0654 . . . . . . . . . . . Cme04g00297
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013935 1 2 1 0 1 1 0 0 1 0 0 1 0 1 1 0 1 1 0 1 0 1 1 1 1 1 1 2 1 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00340 Bpe_Chr04 FPKM 1.245098 1.082082 0.0 0.412731 2.130903 2.782389 1.467228 1.02977 0.420828 1.368288