Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00343 ATGGCTCCGAGATTAAATTTTTCCGGCTGGTGGGGGAAGGATTCACTGAAAGGAACGCCGGTGGTTGTGACAATGGAGAAACCGAATTTCTCGGTGGTTGAAATCGACGGCCCTGACTCTGCATTTCGGCCGATGGAGAAGAGCCGGGGGAAAAATGCTAAACAATTGACTTGGGTATTGCTTCTCAAAGCTCATCGAGCTGTCGGTTGCATAGCCTGGCTCGCCACTGTCCTCTGGGCATTGCTTGGAACCATTAAGAAGAGATTGATTTACAGACAAGGCGTGGCTGTCGAGAGTGGGAAGGTGGAAAAGGGAAAGTTGCTGTTTAGAGTCATTAGAGGATTCTTAGTAACTTCCCTGATAGTTTTGGCTTTTGAGGTTGTCGGTTATTACAACGGTTGGAACTATTTTTCCAATCCAAATCTGCACATTCCACAGGCTTCTGATTTGCAAGGCTTTCTTCATATGGTCTATTTGATCTGGTTAAACTTTAGAGCAAATTACATTGCCCCTCCAATTCAGGCGCTCTCCAAATTCTGTGTTGTTCTGTTCCTCATCCAATCTTTGGATCGTCTGATACTTAGCTTGGGTTGCTTCTGGATAAAGTACAAGAAAATTAAGCCGAAAATAGAGGATGATCTTCGCAAATCGAACGATGTTGAGGGAGCTGGTTATAACTACCCAATGGTTCTTGTTCAAATACCAATGTGTAACGAGAAAGAGGTTTATGAGCAATCTATCTCTGCAGTCTGTCAGATGGATTGGCCAAAGGATCGTATGCTAATTCAAGTTCTCGATGATTCTGACGATGAAAGCATCCAATGGTTGATCAAGGCAGAGGTTAATCAATGGAGCCAAAAAGGTATCAATATAATCTATAGGCATCGGTTGATAAGAACTGGTTATAAAGCTGGAAATCTCAAGTCTGCAATGAGTTGTGATTATGTCAAAGGCTATGAGTTTGTCGCCATCTTCGATGCCGATTTCCAACCCAATCCCGATTTTCTCAAACAAACAGTACCCCATTTCAAGGACAAACCAGAGCTCGGTTTGGTTCAAGCACGATGGGCGTTTGTAAACAAGGACGAGAACTTGTTGACTCGTCTTCAAAACATAAATCTGTGTTTCCACTTTGAGGTAGAACAGCAGGTTAATGGCGTTTTTCTTAGTTTCTTTGGCTTCAATGGTACTGCTGGTGTTTGGAGAATCAAAGCACTTGAAGAGTCTGGTGGATGGCTTGAAAGGACGACTGTGGAGGATATGGACATAGCTGTCAGGGCCCATCTCAATGGCTGGAAATTCATTTTTCTTAATGATGTCAAGGTCATTTGTGAAGTGCCTGAATCGTATGAAGCTTACCGGAAGCAGCAGCATCGGTGGCATTCCGGTCCGATGCAACTATTTCGATTGTGTCTTCCAACAATCATAACTTCTAAGATATCGGCATGGAAAAAAGCTAATATGATTCTACTGTTCTTTCTGTTGAGGAAGCTAATCCTTCCCTTTTACTCATTCACATTGTTCTGTGTAATTCTTCCATTAACCATGTTCGTCCCAGAGGCTGAGCTTCCTGTTTGGGTAATCTGTTACATACCGGTTTTTATGTCATTCCTTAACATCCTTCCGGCACCCAAATCATTCCCTTTTATAGTCCCTTATCTCCTATTCGAAAACACCATGTCAGTCACCAAATTCAATGCCATGGTTTCTGGATTATTCCAATTGGGCAGCTCTTACGAGTGGGTCGTCACAAAAAAGGCTGGCCGGTCATCGGAATCTGACTTGATTGCAGCAGCAGAGAGGGAGTCGAAGCTAATGATTCAGCCACAAATTTGTAGAGGTGCCTCTGATGGCGAGCTCTCTGAGCTACACTTGTTCAAGGAAAAGAAAGAAGTAGCTTCTGCTCCCATTAAGAAAACAAATAAGATATACAAGAAAGAGCTTGCTTTGGCATTCCTTTTGCTCACGGCTTCAATTAGGAGCCTTTTGTCTGCTCAAGGAGTGCATTTCTACTTCTTGCTCTTTCAAGGAGTGACTTTCCTCCTCGTTGGTCTTGATCTTATTGGGGAACAAATGAGCTGA 2082 43.23 MAPRLNFSGWWGKDSLKGTPVVVTMEKPNFSVVEIDGPDSAFRPMEKSRGKNAKQLTWVLLLKAHRAVGCIAWLATVLWALLGTIKKRLIYRQGVAVESGKVEKGKLLFRVIRGFLVTSLIVLAFEVVGYYNGWNYFSNPNLHIPQASDLQGFLHMVYLIWLNFRANYIAPPIQALSKFCVVLFLIQSLDRLILSLGCFWIKYKKIKPKIEDDLRKSNDVEGAGYNYPMVLVQIPMCNEKEVYEQSISAVCQMDWPKDRMLIQVLDDSDDESIQWLIKAEVNQWSQKGINIIYRHRLIRTGYKAGNLKSAMSCDYVKGYEFVAIFDADFQPNPDFLKQTVPHFKDKPELGLVQARWAFVNKDENLLTRLQNINLCFHFEVEQQVNGVFLSFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFIFLNDVKVICEVPESYEAYRKQQHRWHSGPMQLFRLCLPTIITSKISAWKKANMILLFFLLRKLILPFYSFTLFCVILPLTMFVPEAELPVWVICYIPVFMSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSSYEWVVTKKAGRSSESDLIAAAERESKLMIQPQICRGASDGELSELHLFKEKKEVASAPIKKTNKIYKKELALAFLLLTASIRSLLSAQGVHFYFLLFQGVTFLLVGLDLIGEQMS 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2185438 2188118 + Bpe015037.1 Bpe04g00343 102152

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00343 693 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 221 447 IPR029044 -
Bpe04g00343 693 PANTHER - 1 693 - -
Bpe04g00343 693 SUPERFAMILY Nucleotide-diphospho-sugar transferases 227 530 IPR029044 -
Bpe04g00343 693 Pfam Glycosyl transferase family group 2 322 519 IPR001173 -
Bpe04g00343 693 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 5-RELATED 1 693 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00343 - - - qsu:111987347 1241.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00467 Bpe-Chr2:3031902 Bpe04g00343 Bpe-Chr4:2185438 0 dispersed
Bpe04g00141 Bpe-Chr4:951974 Bpe04g00343 Bpe-Chr4:2185438 0 dispersed
Bpe04g00343 Bpe-Chr4:2185438 Bpe06g00415 Bpe-Chr6:15540307 0 dispersed
Bpe02g00225 Bpe-Chr2:1554122 Bpe04g00343 Bpe-Chr4:2185438 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe12g00069 . 595 755 REM Transcription Factor Family AT1G49480 68.9 2.9e-56 215.3
Bpe15g00884 . 225 396 REM Transcription Factor Family AT1G49480 65.1 4.9e-56 214.5
Bpe04g00343 . 1 693 REM Transcription Factor Family AT2G24630 77.2 0.0e+00 1093.6
Bpe02g00225 CCT,ECH 1 693 REM Transcription Factor Family AT2G24630 76.5 2.8e-314 1074.3
Bpe04g00141 BCT,CCT,ECH 1 707 REM Transcription Factor Family AT2G24630 65.3 1.5e-265 912.1
Bpe02g00467 BCT 1 705 REM Transcription Factor Family AT2G24630 65.0 5.7e-265 910.2
Bpe06g00415 . 5 690 REM Transcription Factor Family AT2G24630 62.0 7.3e-244 840.1
Bpe10g00364 . 3 535 REM Transcription Factor Family AT2G24630 72.5 6.8e-226 780.4
Bpe04g00343 . 1 693 REM Transcription Factor Family AT2G24630 77.2 0.0e+00 1093.6
Bpe02g00225 CCT,ECH 1 693 REM Transcription Factor Family AT2G24630 76.5 2.8e-314 1074.3
Bpe04g00141 BCT,CCT,ECH 1 707 REM Transcription Factor Family AT2G24630 65.3 1.5e-265 912.1
Bpe02g00467 BCT 1 705 REM Transcription Factor Family AT2G24630 65.0 5.7e-265 910.2
Bpe06g00415 . 5 690 REM Transcription Factor Family AT2G24630 62.0 7.3e-244 840.1
Bpe10g00364 . 3 535 REM Transcription Factor Family AT2G24630 72.5 6.8e-226 780.4
Bpe04g00343 . 1 693 REM Transcription Factor Family AT2G24630 77.2 0.0e+00 1093.6
Bpe02g00225 CCT,ECH 1 693 REM Transcription Factor Family AT2G24630 76.5 2.8e-314 1074.3
Bpe04g00141 BCT,CCT,ECH 1 707 REM Transcription Factor Family AT2G24630 65.3 1.5e-265 912.1
Bpe02g00467 BCT 1 705 REM Transcription Factor Family AT2G24630 65.0 5.7e-265 910.2
Bpe06g00415 . 5 690 REM Transcription Factor Family AT2G24630 62.0 7.3e-244 840.1
Bpe10g00364 . 3 535 REM Transcription Factor Family AT2G24630 72.5 6.8e-226 780.4
Bpe12g00069 . 595 755 REM Transcription Factor Family AT1G49480 68.9 2.9e-56 215.3
Bpe15g00884 . 225 396 REM Transcription Factor Family AT1G49480 65.1 4.9e-56 214.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006307 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00343 Bpe_Chr04 FPKM 1.337243 1.21793 1.449326 0.965337 5.76132 6.189457 5.57449 0.896073 0.700584 0.560929