Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00347 ATGCAGGAAGAAATGGCCAGGAGAAAAGAAGAGGAGAAAAGGAAAAGGAGGGAAGAAGAAGAGAAGTTGAGGAGGGAAGAGGAGGAAAGGCTTAGGCAAGAAGAACTTGAGAGGCAGGCAGAAGAAGCAAAGCGAAGGAAAAAAGAAAAAGAAAAGGAGAAGCTTCTGAAGAAGAAATTGGAAGGCAAGCTTTTGACTGGGAAGCAAAAGGAAGAACAGCGTAGGTTACAGGCAATGAAGAACCAGTTTCTTGCAAATGGTGTGGGTTTGCCTCTTCCCACAGCGGACTCTGGTGCACCAGGTAAACGGCCTATATACAAGACAAAGAAGACCAAAATGACACAACACCAAGCAAGCAGTAGTCCAGCTAAGGTGGTTGAGAACATAGAAGAAATTGAAAATCAACAAGACACTGTGTCAGAGATTGAATACATGGAAGGGAAGAACATTGAAGATGCAGAAACAATTAATGTGGATGAGAAATCTGAAATTTGTGAAACTGTTGAAGAGAATGGAATAGTTGAAGAGGATGTGGATGAGGATGAGGATGAATGGGATGCGAAGAGCTGGGATGATGCTGTTGTTAGTCTATCTATTAAGAGTGCATTTTCCAATGAAGAAGACACTGTATCAGAGCCCATGGTGAAAAAGGAGAAAAAGACTGTACCAGCTTCTCATCATGCAGAAACAATTATAGGCAGCACACCAGGTCTTTCTGTCAGCCAAAGCTTTTCCTCTAAGGATGTTGAATTTAGAAAAAAGCAGCCTGAGGTGGAAATTGTGGATAACAACAAAAGAAAAATTGCTTTTGTTAAGAAGGAAGCACCAAGTTTGGATACTGCTCCTAAAAAGAGTGAAAATAGTCTCCGTTCTCCTATTTGCTGCATTATGGGCCATGTTGATACTGGTAAAACCAAGCTTCTGGATTGTATCCGAGGAACTAATGTTCAAGAAGGTGAGGCTGGAGGTATTACCCAACAGATTGGAGCGACTTATTTTCCTGCAGAAAACATACGTGAAAGAACTAGAGAGTTGAAAGCAGATGCAACCTTGAAAGTTCCGGGTCTACTTGTTATTGATACCCCTGGACATGAATCTTTCACGAACCTGCGTTCTCGGGGTTCTGGTTTATGTGATATTGCAATTTTAGTCGTTGACATTATGCATGGTTTAGAGCCACAAACAATAGAATCACTCAATTTATTAAAAATGAGGAGCACAGAATTCATTGTTGCACTTAATAAGGTGGATCGACTGTACGGGTGGAAAACATGTCGAAATGCACCAATTGTGAAGACAATGAAGCAGCAATCCAAGGACGTGCAGAATGAGTTCAATATGAGGCTCACTCAGATTATTACTCAATTCAAAGAGCAGGGTTTAAATACTGAACTATATTATAAAAATAAAGAAATGGGGGAAACTTTCAGTATAGTACCGACAAGTGCAATAAGTGGTGAAGGCATACCAGATTTGTTATTGTTGCTAGTTCAATGGACTCAGAAAACTATGGTTGAAAAGCTTACTTACAGTGATGAAGTTCAGTGTACAGTGTTGGAGGTCAAGGTGGTTGAAGGTCATGGAACAACCATCGATGTTGTATTAGTTAATGGTGTGCTTCATGAAGGAGACCAAATAGTTGTTTGCGGAATGCAGGCAGGGTCCATTTGTTACTTCCATTCGAGCATTATTGACACCGCACCCAATGAAGGAACTCCGAGTTAA 1725 40.87 MQEEMARRKEEEKRKRREEEEKLRREEEERLRQEELERQAEEAKRRKKEKEKEKLLKKKLEGKLLTGKQKEEQRRLQAMKNQFLANGVGLPLPTADSGAPGKRPIYKTKKTKMTQHQASSSPAKVVENIEEIENQQDTVSEIEYMEGKNIEDAETINVDEKSEICETVEENGIVEEDVDEDEDEWDAKSWDDAVVSLSIKSAFSNEEDTVSEPMVKKEKKTVPASHHAETIIGSTPGLSVSQSFSSKDVEFRKKQPEVEIVDNNKRKIAFVKKEAPSLDTAPKKSENSLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKADATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRSTEFIVALNKVDRLYGWKTCRNAPIVKTMKQQSKDVQNEFNMRLTQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTYSDEVQCTVLEVKVVEGHGTTIDVVLVNGVLHEGDQIVVCGMQAGSICYFHSSIIDTAPNEGTPS 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2212055 2214875 - Bpe015040.1 Bpe04g00347 102156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00347 574 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 5B-LIKE 1 556 - -
Bpe04g00347 574 TIGRFAM small_GTP: small GTP-binding protein domain 294 419 IPR005225 GO:0005525
Bpe04g00347 574 MobiDBLite consensus disorder prediction 1 74 - -
Bpe04g00347 574 MobiDBLite consensus disorder prediction 169 186 - -
Bpe04g00347 574 Gene3D Translation factors 511 563 - -
Bpe04g00347 574 Gene3D - 283 510 IPR027417 -
Bpe04g00347 574 MobiDBLite consensus disorder prediction 150 168 - -
Bpe04g00347 574 CDD IF2_eIF5B 292 502 - -
Bpe04g00347 574 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 1 556 IPR015760 -
Bpe04g00347 574 PRINTS GTP-binding elongation factor signature 409 418 IPR000795 GO:0003924|GO:0005525
Bpe04g00347 574 PRINTS GTP-binding elongation factor signature 293 306 IPR000795 GO:0003924|GO:0005525
Bpe04g00347 574 PRINTS GTP-binding elongation factor signature 357 367 IPR000795 GO:0003924|GO:0005525
Bpe04g00347 574 PRINTS GTP-binding elongation factor signature 373 384 IPR000795 GO:0003924|GO:0005525
Bpe04g00347 574 Pfam Elongation factor Tu GTP binding domain 293 501 IPR000795 GO:0003924|GO:0005525
Bpe04g00347 574 Coils Coil 1 60 - -
Bpe04g00347 574 MobiDBLite consensus disorder prediction 88 128 - -
Bpe04g00347 574 MobiDBLite consensus disorder prediction 150 186 - -
Bpe04g00347 574 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 289 505 IPR000795 GO:0003924|GO:0005525
Bpe04g00347 574 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 285 553 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00347 Bpe-Chr4:2212055 Bpe11g00616 Bpe-Chr11:4720391 3.36E-27 dispersed
Bpe02g00218 Bpe-Chr2:1513348 Bpe04g00347 Bpe-Chr4:2212055 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00347 K03243 - zju:107427478 696.427