Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00353 ATGTCATTCCGCAGCATAGTCCGGGACGTTAGGGATGGATTTGGAAGCTTTTCGAGGCGTAGTTTTGAGGTGGGAATCCCAGGTCACCATAGAGGGAAATCCCACGGGGCCGTCCATGAGATGACTGACCACCCTCTTGTAATCCAAACTAGTCCTTGGGCTAGTCTCCCACCAGAACTACTGAGGGATGTCGTCAAACGATTGGAAGCGAGTGAGAGTACTTGGCCTTCACGCAAGCATGTTGTCTCCTGTGCTTCTGTGTGTAGGTCATGGAGAGAAATGTGCCAGGAAATTGTCCAAAATCCAGAGTTTTCTGGCAAGATCACGTTTCCAGTCTCCTTGAAGCAGCCTGGGTCTCGAGATGGAACAATTCAATGCTTCATTAAGAGGGATAAATCTAATTTAACTTACCGGCTTTTCCTTTGCCTTAGTCCTGTGGCAACTTTCTTTATATTGTTTATGGATCTGAATTTATCAATGTTTGATATGTTTGCAGCTTTACTTGTTGAGAGTGGAAAATTTCTCCTTTCAGCGAAACGAACGAGGAGAACTACCTGCACCGAATACGTGATCTCCATAGATGCTGATAATATATCAAGATCAAGCTGCACATATATCGGAAAGATAAGGTCAAATCTTCTGGGGACAAAATTCTTAATATACGATACGCAGCCTCCTTACAACAGCGTGCAACTTTCCCCACCAGGTCGAAGCCGAAGACTTACCTCGAAGAAAGTTTCTCCGAAAATCCCTACAGGTAATTACAATATTGCTGAGGTTACATACGAGCTGAATGTTTTAGGGACGCGGGGCCCACGGAGAATGCACTGCACCATGCATTCGATCCCTGTCTCGGCCATCGAGCCAGGAGGCACCATCCCCGGCCAGCCCGAGCTCCTCCCCCGTTCCCTCGAGGACTCCTTCCGAAGCATTTCCTTCTCAAAGTCGGTTGATAACAGCACCGAGTTTAGCAGTGCTCGCTTCTCCGACGTTGTGAGGCTGAATGAAGATCAAGAAGAGCATGAAGAGGATGAGTTGAAAGAAAAGATCAGACCCTTAATTCTCAAGAACAAATCCCCTCGCTGGCATGAGCAGTTGCAGTGTTGGTGCCTTAACTTCCGAGGGCGGGTGACTGTGGCCTCGGTCAAGAACTTTCAACTGATAGCGGCTGAGGAATCTCCTCCTGTCCAGCCAGACCATGACAAGATCATTCTTCAGTTTGGCAAGGTTGGAAAAGATCTGTTTACCATGGATTATAGATATCCTTTGTCTGCGTTTCAAGCTTTTGCCCTCTGTTTGAGCAGCTTCGACACGAAATTGGCTTGTGAATAG 1332 47.22 MSFRSIVRDVRDGFGSFSRRSFEVGIPGHHRGKSHGAVHEMTDHPLVIQTSPWASLPPELLRDVVKRLEASESTWPSRKHVVSCASVCRSWREMCQEIVQNPEFSGKITFPVSLKQPGSRDGTIQCFIKRDKSNLTYRLFLCLSPVATFFILFMDLNLSMFDMFAALLVESGKFLLSAKRTRRTTCTEYVISIDADNISRSSCTYIGKIRSNLLGTKFLIYDTQPPYNSVQLSPPGRSRRLTSKKVSPKIPTGNYNIAEVTYELNVLGTRGPRRMHCTMHSIPVSAIEPGGTIPGQPELLPRSLEDSFRSISFSKSVDNSTEFSSARFSDVVRLNEDQEEHEEDELKEKIRPLILKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAEESPPVQPDHDKIILQFGKVGKDLFTMDYRYPLSAFQAFALCLSSFDTKLACE 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2239597 2242949 + Bpe015045.1 Bpe04g00353 102162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00353 443 SUPERFAMILY Tubby C-terminal domain-like 102 443 IPR025659 -
Bpe04g00353 443 Gene3D Tubby Protein; Chain A 112 437 IPR025659 -
Bpe04g00353 443 Pfam F-box domain 53 101 IPR001810 GO:0005515
Bpe04g00353 443 ProSitePatterns Tub family signature 1. 373 386 IPR018066 -
Bpe04g00353 443 Pfam Tub family 114 438 IPR000007 -
Bpe04g00353 443 SUPERFAMILY F-box domain 48 96 IPR036047 GO:0005515
Bpe04g00353 443 Gene3D - 48 101 - -
Bpe04g00353 443 PRINTS Tubby superfamily signature 373 389 IPR000007 -
Bpe04g00353 443 PRINTS Tubby superfamily signature 355 372 IPR000007 -
Bpe04g00353 443 PRINTS Tubby superfamily signature 205 229 IPR000007 -
Bpe04g00353 443 PRINTS Tubby superfamily signature 421 443 IPR000007 -
Bpe04g00353 443 PRINTS Tubby superfamily signature 189 205 IPR000007 -
Bpe04g00353 443 PRINTS Tubby superfamily signature 254 281 IPR000007 -
Bpe04g00353 443 PRINTS Tubby superfamily signature 400 419 IPR000007 -
Bpe04g00353 443 PANTHER TUBBY-RELATED 1 443 - -
Bpe04g00353 443 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 443 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g00213 Bpe04g00353 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00385 Bpe-Chr2:2514648 Bpe04g00353 Bpe-Chr4:2239597 7.12E-130 dispersed
Bpe04g00353 Bpe-Chr4:2239597 Bpe05g00406 Bpe-Chr5:18452789 0 dispersed
Bpe02g00213 Bpe-Chr2:1479145 Bpe04g00353 Bpe-Chr4:2239597 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21216 PF01167 Tub 2.20E-107 CL0395 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00353 K19600 - qsu:111992792 719.924