Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00357 ATGGCGGTTTCCGTTTCTGCCTCAACGGTTCCGACGCTGAACTTTTGTTCTTTGAATCGCGTAGCTCCTGCTTCTTCCTTTGCTCCATTGAAACTATCTGCTTCCTTCTCGCCTGTTCGATTTCCATGGCCTTCCCGTGTTCGAGATGGAAGGAAAGTGGTTACACATTCGTTTCGACCTAGGATTCTTCCGCTGGTCAAAGCAAAGAAGCAAACTTTCTCCTCTTTTGATGATTTACTGGAAGAGTCTGACAAACCTGTTTTGGTTGACTTTTATGCAACTTGGTGTGGTCCTTGTCAATACATGGTTCCTGTTCTCAAGGAAGTAGGCTCTAAGCTAAAAGATACAATTCAGGTGGTCAAAATTGATACTGAAAAATATCCTAGTATTGCTGCGAAATACAATGTAGAAGCCTTGCCTACTTTCATCATTTTCAAGGATGGCAAACCATATGACCGCTTTGAGGGTGCTTTAACTGCAAATCAGCTCATCGAACGAATAGAAAGTACTTTGAAGGTGAAGCAGTAG 528 42.8 MAVSVSASTVPTLNFCSLNRVAPASSFAPLKLSASFSPVRFPWPSRVRDGRKVVTHSFRPRILPLVKAKKQTFSSFDDLLEESDKPVLVDFYATWCGPCQYMVPVLKEVGSKLKDTIQVVKIDTEKYPSIAAKYNVEALPTFIIFKDGKPYDRFEGALTANQLIERIESTLKVKQ 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2255669 2257827 + Bpe015048.1 Bpe04g00357 102166

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00357 175 Gene3D Glutaredoxin 66 175 - -
Bpe04g00357 175 TIGRFAM thioredoxin: thioredoxin 73 169 IPR005746 GO:0015035
Bpe04g00357 175 PANTHER GEO12009P1 3 174 - -
Bpe04g00357 175 PANTHER THIOREDOXIN Y1, CHLOROPLASTIC 3 174 - -
Bpe04g00357 175 Pfam Thioredoxin 70 168 IPR013766 -
Bpe04g00357 175 PRINTS Thioredoxin family signature 95 104 - -
Bpe04g00357 175 PRINTS Thioredoxin family signature 87 95 - -
Bpe04g00357 175 PRINTS Thioredoxin family signature 135 146 - -
Bpe04g00357 175 CDD TRX_family 74 168 - -
Bpe04g00357 175 ProSitePatterns Thioredoxin family active site. 88 106 IPR017937 -
Bpe04g00357 175 ProSiteProfiles Thioredoxin domain profile. 30 172 IPR013766 -
Bpe04g00357 175 SUPERFAMILY Thioredoxin-like 72 172 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00357 - - - aprc:113871021 225.328
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00357 Bpe-Chr4:2255669 Bpe05g00104 Bpe-Chr5:1969986 5.13E-20 dispersed
Bpe15g01398 Bpe-Chr15:21879994 Bpe04g00357 Bpe-Chr4:2255669 2.86E-08 dispersed
Bpe04g00357 Bpe-Chr4:2255669 Bpe02g01711 Bpe-Chr2:19597096 1.52E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1363 . Blo12g00783 . Bda03g00395 . Bpe04g00357 Bma04g00373 . . . . Cma09g01174 . . . . . . . . . . . . . . . . . . . . . . Cone20ag0373 . . . . . . . . . . . . . . Cmo09g01181 . . . . . . . . . . . . . . . . . . . . . . Chy03g00253 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013186 1 1 1 1 1 0 2 0 0 1 1 0 2 1 1 2 0 1 1 0 0 1 1 1 1 1 1 1 2 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00357 Bpe_Chr04 FPKM 13.890085 14.127481 10.774831 10.791878 18.367956 17.866312 19.107937 11.694654 11.128678 9.658401