Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00380 ATGCAACCCAATAATGGTGATGAGGCCGTTCATAAAAATTCTAGACATTCTGTAAATAATGAGACAGAGAGTTCTTCCCCTATTTGGGATGTGATGGATGCTGCAATCTGGGAACCTCCTGGGCCTGGAGACCTTGATGATGACTTGGAAGAAAACTTTACTGACGACAATGATGAAGAAGCAAGTGTGGTTTGTAATCAAGACACCAATATTGAAGAATGCGGCAAGTCATTTTCTTTGAGTTTTAAAGAAAGAAATGTGAGCTTTAAACTTAGAGAGGAGAAACTAAGAGCAATGGAGGAGGTTTATAACGGGCGGTTCAAGTCTATTGTTCATCAACTTTTTCAATCTTTTGGAGTTGATTCGTCGGCCAAAGATGGTGAAAATTGGGTGGACATTGTTGCGTCTTTATCTTGGGAAGCTGCTTTGTTTTTGAAGCCTGACACCTCAGATGGAAAAGCAATGGATCCTGACGGCTCCGTAAAAGTTAAATGTGTTGCTGTGGGATCGCGCGGCCAAAGTAAATTTATCAAGGGTTTAGTCTTCAAAAAGCACGCATCTCACAAGCACATGCCAACCAAATTTAAAAACCCAAAGTTGCTGTTGATCCAAGGAGTGCTAGGTCCGTCTTCAAGTGGGTTGCTATCGCTCAATACAATGGATCAGGAAAAGGATCATGAAAAGTCTATAATTGAGATTATTGAATTATGCCAACCGGATGTGATTTTAGTCGAAAAAACTGTCTCTCGTGGTATCCAAGAATCTATTCTTCGAAAAGGAAGAACATTAGTTCTTGAGATGAAGCTTCACCGGTTAGAGAGAATTGCTCGTTGCCTTGGTTCGCCTATTCTATCCGCTGATTCTATGATGAACCAAAAGCTAAAATATTGCGACACTCTTTACTTTGAAAAATACGTAGAAGAACATGTCACTTTTGGTGAGGAAGGAAAGCGTACAAGTAAGACATTATTGTTCATTGAGGGTTGTCCTACACGTCGAGGTGGTACGATTTTGCTGAAAGGATCGCACAGTGATGAATTGAAGAGGATTAAGTGCGTAGTTCGCTGTGCGGTGGTCATCGCCCATCATTTGATACTTGAGACTTCATTCCTTGTCGATCAGAGTGCTATGTTTACGACGATACCATTTGTGGGCTTGTCAGAATTTATGCCGCTTAACAAACAATTCCCTGATTTGGTTCGTAGTAGTAGTTCTCAACTTGAGGAACCTGCTGATAATATTCTTCAATCCACTGTTGATATTCCCATTTCCACCGAATTCCAAGGAGGTTCTGAAGAATCAAACTTGGAATTACAAGGCGACTTGGCCATTTCTCATGAACCATATACTCCACTTATTTTTTCTGGCTTTTCCTCCCTTTCAGAATCACTGAAAAAGGTTATTGGAGATATCCCTTTTGCCTCGTCGTATTCATCGTTATCGTCTTATTTTGGATTCCATGGAGACCAACCTGATGGTCAGATTAATGAGACCATTTCCATTCCAATTGTGACAGAGACAGATCATGGTTATAATGAAAGTAAAGGTACATTGGATGAAGAGAACTTAGTTGAAGACGTAAAACCCCAGTCAATACCAGCATTCTCTGAAAGCCCAGCTGAGGTGGAAAAGGCTCATGGGTGTGTTGAAGAGCATACAAAGAGAGAAGATAATGTCCACCCCATATCAAACTCCCAGAGTATCTTAGTTCTGATGTCAAGCCGAAATGCCATGAGAGGAGTTGTATGTGAACAAAGCCATTTTTCTCATATCATGTTCTACAAGAATTTTGATGTTCCGCTAGGAAAGTTTCTACGAGAAAATTTATTAAACCAGAATACCAAGTGCAATTCATGTGGTGAACCGCCGGGAGCTCACTTTTACTACTATGCTCATAATAACAAGCAGCTAACAATCCAAGTCCGACAGATTCCGGGAGGAAAATTCTTGCCTGGGAAAAAGGAAGGGAAACTTTGGATGTGGAGTCGATGTGGTTATTGTAAATCGGAAAAAGGGACATCAAATTATAGCAAAAGGGTCTTAATTTCACCCGATGCACGATGTTTATCATTCGGGAAGTTCCTTGAGCTCAGTTTCTTTCACTATTCTTCATCCACTAAATTGTCCAGCTGTGGCCATTCATTGTACAAAGACTTCCTTCACTTCTTTGGATTTGGCCCCATGGTTGCTATGTTCAAATATTCTCAGGTTCCAACTTATACAGTGTCTGTTCCTCCTCAGAAGCTGGAGTACGGCAAGTTAGACGGACAAGAGAGGGTTATCAAAGCAACTCAAAATGTGTACATGAAAGGGATGCAACTGTTTACGGAGATCGCAAACACTTTGAAAAAGATCAGATCTCAACTTAAAAGCACAACTTTGAATCTTCAAGGCTCACTTAAAGACTTCTCTGTTATTGAAGAGATGCTAAAGAGAGATAGATTTGAATTTGAGGTGAACATTCATAATATTCTTACTGATGATGGGAATGCTGACCCTGTTTACAAGTTTCTCCTTATTAATCGACTTCTCTGGGAGCTTTTGCTGGAATCGTGTATATGGGATCGTCGCCTTTATTCATTACTTTCTCCCAATTCACCTATTTACTGTGAAGTGGCTGAAAAAGTTATGCCTGAACCAATTAGAGTAACTGAAGGGACAGAACAATATGATGAAATAGGAATTTATGATAGTCCCCAATTAGCAATTCAGACAGAGAAATCATTAGGATCAAATGAATTTTTGGTGAAAGAAAACAAAGTTGAAGTAGTTGTTCCAATAGATACGAATTCCTCGCCAGATAATTCAAGCCAGAAGGATTATGATATTATTTTCGATCAAGTCCCGAGTTTCAAATGTGATTATTCCAAGGTGTATGCGTCAAAAGAAGGGGCGTCTTTGAATAAATCCTCCTCCAAATTAGGAGTTTCAAAGGATTGGTACTGGACACCATTTTCTGAGATTCGACAGGTACACATGAAGGACATTACAAGAAGTTATATACCGAAATTTGAAGTCGTGAGTAGCGATACGGCAAACTATTTACCCTCAGCATACCAACTAATAATGCAAGAAGGATCGAGGCTTCACATTCCTCTTGGAACCGACGATCATATTGTGTCAGATTTTGAAGGAGAACTCTCAAGCATTGTTGCCTGTGTTCTAGCGATGTTGAACGAACTGCCTGTCCAAACAGAAATCCCAGATCAGGAGAAGGTAGAGCTCCGAGTTTCTGCTAAATCGTTTGATAATTTACGCAGCCTGAATCGATTTCCTTCAAGTGGATCTTCAGAGTCTGATTCCATTGAAGGATTAAGATTTTTCAGTTTTGATGGGTTGAATCTGCTAGATTCTATTGTTCCAGAGACTTTTCGACCAGCAGAACCTGAAGGCGTTGTCCGATCACTTGCAAAGGGAAAGTATATCGTAAATTGCCCATATTTCATGCAATTTCTTGATCTTCGGAGCCGATGCTTACCTTCTGAGTTACATTACATTGCTTCTCTGAGCCGTTGTAGAGACTGGGAAGCCCAAGGCGGAAAAAGCAAATCTTTTTTTGCTAAAACACTTGATGACAGGTTTATAATAAAGGAAATTAAGAAGACAGAATATGATTCCTTCATGAAGATCGCGCCTGATTATTTCGAGTACATGAATCAATCGTTTGAATTGGGAAATCAAACTTGCCTAGCCAAAGTTCTCGGGATTTATCAGGTAATGGTTAGACAGACAAAAAGCGGAAAGGAGACAAGGCATGATCTAATGGTGATGGAAAATCTCACATATGGTCGGAAAATTTCTCGCCAATATGATCTTAAAGGAGCCCTTCATGCTCGATACAATTCAGTTGCCAGCGACGTGCTTTTAGATCAGAATTTCGTCAACGACATGAATACATCCCCGTTGTATGTTAGTAACCAAGCAAAGCGAATCTTGCAAAGGGCTGTTTGGAATGACACAACTTTCCTCAATTCGATAAATGTAATGGACTATTCTTTACTTGTCGGAGTCGATTCCGAAAGGCGAGAACTTGTCTGTGGAATCATTGATTACCTAAGGCAATATACATGGGATAAGCATCTAGAGACATGGGTAAAATCTTCGCTTGTTCCTAGGAATATCTTGCCGACTGTAATATCTCCGAAAGAATACAAGAGGAGATTCAGGAAGTTCATGTCGACAAATTTCTTTAGTGTCCCAGATCGTTGGTGCATGCAGAGGAGCGAGTTTGACGACCCTTGTGAACTATGTGGCGTGGGAGAAGATGAAGTCCTGAATTGA 4281 40.32 MQPNNGDEAVHKNSRHSVNNETESSSPIWDVMDAAIWEPPGPGDLDDDLEENFTDDNDEEASVVCNQDTNIEECGKSFSLSFKERNVSFKLREEKLRAMEEVYNGRFKSIVHQLFQSFGVDSSAKDGENWVDIVASLSWEAALFLKPDTSDGKAMDPDGSVKVKCVAVGSRGQSKFIKGLVFKKHASHKHMPTKFKNPKLLLIQGVLGPSSSGLLSLNTMDQEKDHEKSIIEIIELCQPDVILVEKTVSRGIQESILRKGRTLVLEMKLHRLERIARCLGSPILSADSMMNQKLKYCDTLYFEKYVEEHVTFGEEGKRTSKTLLFIEGCPTRRGGTILLKGSHSDELKRIKCVVRCAVVIAHHLILETSFLVDQSAMFTTIPFVGLSEFMPLNKQFPDLVRSSSSQLEEPADNILQSTVDIPISTEFQGGSEESNLELQGDLAISHEPYTPLIFSGFSSLSESLKKVIGDIPFASSYSSLSSYFGFHGDQPDGQINETISIPIVTETDHGYNESKGTLDEENLVEDVKPQSIPAFSESPAEVEKAHGCVEEHTKREDNVHPISNSQSILVLMSSRNAMRGVVCEQSHFSHIMFYKNFDVPLGKFLRENLLNQNTKCNSCGEPPGAHFYYYAHNNKQLTIQVRQIPGGKFLPGKKEGKLWMWSRCGYCKSEKGTSNYSKRVLISPDARCLSFGKFLELSFFHYSSSTKLSSCGHSLYKDFLHFFGFGPMVAMFKYSQVPTYTVSVPPQKLEYGKLDGQERVIKATQNVYMKGMQLFTEIANTLKKIRSQLKSTTLNLQGSLKDFSVIEEMLKRDRFEFEVNIHNILTDDGNADPVYKFLLINRLLWELLLESCIWDRRLYSLLSPNSPIYCEVAEKVMPEPIRVTEGTEQYDEIGIYDSPQLAIQTEKSLGSNEFLVKENKVEVVVPIDTNSSPDNSSQKDYDIIFDQVPSFKCDYSKVYASKEGASLNKSSSKLGVSKDWYWTPFSEIRQVHMKDITRSYIPKFEVVSSDTANYLPSAYQLIMQEGSRLHIPLGTDDHIVSDFEGELSSIVACVLAMLNELPVQTEIPDQEKVELRVSAKSFDNLRSLNRFPSSGSSESDSIEGLRFFSFDGLNLLDSIVPETFRPAEPEGVVRSLAKGKYIVNCPYFMQFLDLRSRCLPSELHYIASLSRCRDWEAQGGKSKSFFAKTLDDRFIIKEIKKTEYDSFMKIAPDYFEYMNQSFELGNQTCLAKVLGIYQVMVRQTKSGKETRHDLMVMENLTYGRKISRQYDLKGALHARYNSVASDVLLDQNFVNDMNTSPLYVSNQAKRILQRAVWNDTTFLNSINVMDYSLLVGVDSERRELVCGIIDYLRQYTWDKHLETWVKSSLVPRNILPTVISPKEYKRRFRKFMSTNFFSVPDRWCMQRSEFDDPCELCGVGEDEVLN 1426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2393596 2400002 + Bpe015068.1 Bpe04g00380 102189

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00380 1426 Gene3D Phosphatidylinositol Phosphate Kinase II Beta 1122 1259 IPR027484 -
Bpe04g00380 1426 SUPERFAMILY SAICAR synthase-like 1140 1396 - -
Bpe04g00380 1426 PANTHER 1-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASE-RELATED 24 1417 - -
Bpe04g00380 1426 Pfam Phosphatidylinositol-4-phosphate 5-Kinase 1178 1341 IPR002498 GO:0016307|GO:0046488
Bpe04g00380 1426 Pfam Phosphatidylinositol-4-phosphate 5-Kinase 1344 1393 IPR002498 GO:0016307|GO:0046488
Bpe04g00380 1426 Pfam TCP-1/cpn60 chaperonin family 123 370 IPR002423 GO:0005524
Bpe04g00380 1426 PANTHER 1-PHOSPHATIDYLINOSITOL-3-PHOSPHATE 5-KINASE FAB1D-RELATED 24 1417 - -
Bpe04g00380 1426 ProSiteProfiles Phosphatidylinositol phosphate kinase (PIPK) domain profile. 1078 1396 IPR002498 GO:0016307|GO:0046488
Bpe04g00380 1426 CDD Fab1_TCP 108 374 - -
Bpe04g00380 1426 Gene3D - 1261 1397 - -
Bpe04g00380 1426 MobiDBLite consensus disorder prediction 1 27 - -
Bpe04g00380 1426 SMART PIPK_2 1113 1397 IPR002498 GO:0016307|GO:0046488
Bpe04g00380 1426 Gene3D GroEL 172 341 IPR027409 -
Bpe04g00380 1426 CDD PIPKc_PIKfyve 1147 1396 IPR044769 GO:0000285
Bpe04g00380 1426 SUPERFAMILY GroEL apical domain-like 173 341 IPR027409 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00380 K00921 PIKFYVE, FAB1; 1-phosphatidylinositol-3-phosphate 5-kinase [EC:2.7.1.150] - vvi:100242669 1523.84
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00190 Bpe04g00380 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00380 Bpe-Chr4:2393596 Bpe10g00991 Bpe-Chr10:15322679 2.88E-97 dispersed
Bpe02g00190 Bpe-Chr2:1316194 Bpe04g00380 Bpe-Chr4:2393596 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1304 Blo01g01752 . . Bda03g00414 Bpe02g00190 Bpe04g00380 Bma04g00391 Bma01g02535 . . . Cma09g01172 . . . Cpe06g00918 . . . . . . . . . . . . . . . . . . Cone20ag0680 . . . . . . Bda11g00850 . . . . . . . Cmo09g01170 . . . Car09g01046 . . Bhi09g01620 . . . . . . Cla09g00997 Cam09g1055 Cec09g1057 Cco09g1071 . . Cre09g1019 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004019 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 0 0 7 3 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00380 Bpe_Chr04 FPKM 9.029505 8.232202 7.879775 7.387079 7.744787 7.473414 7.709079 15.024956 13.40812 14.065573