Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00384 ATGGTCAACGAAGCTGGAAAAGGCCTCCATTTGATTCACTTGCTCCTCATCTCAGCAACTGCAATCGATCAAAAGAATACAGACTTGGCCTTGAAAAATTTAATCCAGCTCTACGGCTTGGTTTCTCTGACGAACGACTCGATCCATCGAGTTGTAGCCTACTTTGCCGATGGATTAGCTGCGAAAATTCTCACCAGAAGGTCTCCTTTCTTTGATTTGATCTTGAAAAGCCCATCTGACGAAGAAGATTTTTCCGCTTATACTGATTTGTATCGAGTTTCTCCTTACTTTCAGTTCGCTCATTTTACTGCAAATCAGGCTATAATTGAAGCGTTTGATAAAGAAGAAGAGAAGAACAATCGAGCTATACATATAATCGATTACGACGTGTCTTATGGGTTTCAGTGGCCTTCGCTGCTACAATCTCTTTCAGAAAAAGCCATCAATGGCGATCGAATATTTCTCAAAATTACAGGGTTCGGAAGGACAGTTGAAGAACTCAGAGAAACTGGAAACAGATTGGTAAGTTTCTCCAAAGGGTTAGTGAATTTGTCATTCGAATTCGAAGGGTTGCTAAGAGGGTCAAAGATTATTAATCTGAAGAAAAGGGAGAACGAAACCGTAGCAGTAAATCTGTTTTTCCATTATAGTTCTTCAAAAACTAGTTTGGCGAACATTTCTGAGACGCTGAAAACAGTTCATTCGTTCAAACCATCAACCATAGTTCTTGTTGAGCAAGAAGGCTGCAGTTGCAGAGGACAAAAAAACTTCATTTCAACTTTCATGGAGTCTCTGCATTATTTCGCCGCCATGTTCGATTCATTGGACGACTGTCTACCTCGAGACAGCTCCGAAAGACTGAACATAGAGAAGAACAATCTGGGGAAGGAGATCAAAAGTATGTTGAACTCGGATGGGTTTGAGAGGCAGTGTGAGAAAGTAGATGCAGGAGAAGAAACATGGAAGTCTTTAATGGAAAGCCATGGGTATGAAGGAATAAAGGTAAGCTCAAAGAGTGTTATACAGGCGAAGCTGCTTCTGAAGATGAGAAGCCATAATTCTTCTCCATTGCAGTTTGATGAAGAGAAAGGAGGTGGATTTAGGGTTAGTGAGAGAGACGATGGGCTGGCTCTTTCTCTCCGATGGCAAGATAGGAATCTTCTAACCGCATCTGCATGGAAATGTTCATGA 1191 41.39 MVNEAGKGLHLIHLLLISATAIDQKNTDLALKNLIQLYGLVSLTNDSIHRVVAYFADGLAAKILTRRSPFFDLILKSPSDEEDFSAYTDLYRVSPYFQFAHFTANQAIIEAFDKEEEKNNRAIHIIDYDVSYGFQWPSLLQSLSEKAINGDRIFLKITGFGRTVEELRETGNRLVSFSKGLVNLSFEFEGLLRGSKIINLKKRENETVAVNLFFHYSSSKTSLANISETLKTVHSFKPSTIVLVEQEGCSCRGQKNFISTFMESLHYFAAMFDSLDDCLPRDSSERLNIEKNNLGKEIKSMLNSDGFERQCEKVDAGEETWKSLMESHGYEGIKVSSKSVIQAKLLLKMRSHNSSPLQFDEEKGGGFRVSERDDGLALSLRWQDRNLLTASAWKCS 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2423087 2424277 + Bpe015071.1 Bpe04g00384 102193

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00384 396 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 8 394 IPR005202 -
Bpe04g00384 396 PANTHER OSJNBA0084A10.13 PROTEIN 8 394 - -
Bpe04g00384 396 ProSiteProfiles GRAS family profile. 2 394 IPR005202 -
Bpe04g00384 396 Pfam GRAS domain family 11 394 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00384 - - - pvy:116104885 517.694
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00384 Bpe-Chr4:2423087 Bpe11g01481 Bpe-Chr11:11017199 1.27E-68 dispersed
Bpe04g00384 Bpe-Chr4:2423087 Bpe02g02000 Bpe-Chr2:21717752 5.80E-50 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1264 . . . . . Bpe04g00384 Bma04g00395 . . . . Cma09g01285 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00827 . . . . . . . Car09g01099 . . . . . . . . . . . . . . . . . . Chy03g00283 Cme01g00709
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018197 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 5
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21221 PF03514 GRAS 4.70E-87 CL0063 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00384 Bpe_Chr04 FPKM 15.142621 16.482695 19.537203 21.064035 25.820608 22.73921 26.683815 20.711443 18.735001 20.77326