Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00398 ATGGCTCAATCCCTTCAACACCCACTGTCCATTTCCTCGAGCTCAGACCCTAAAAAGACGAAGCGAATACGAGACTCGAGCAAACACCCGATCTATAGAGGAGTTCGCATGAGAAATTGGGGTAAGTGGGTTTCTGAGATTCGCGAACCTCGAAAGAAATCTCGTATTTGGCTTGGAACCTTCCCTACCCCTGAAATGGCTGCAAGAGCACACGACGTCGCCGCTTTGAGCATCAAAGGTACGTCCGCCATTCTTAACTTCCCAGAACTCGCAGACTCCCTTCCTCGACCGGTCTCCATCGCTCGCCGGGACGTTCAAGCGGCGGCGGCGAAGGCAGCTCAGATGGAGATATTCGACTCTAGGCAGTCAATGTCATCTTCTTCTTCGCTGTCGTCGCTCGTGTCTATGATGGATTTGTCGTCCCCTCCAGCAACGAATGATTCAGAGGAGCTGAGCAAGATCCTGGAATTGCCTAGTCTGGGGAATGCATATGATTCGTACGACTTGATCAGGGAGTTTGAGTTTTTTGACTCGGCGGATTGCTGGGCTTATCCGCCGCCATGGTTGCAGAGCATAGGGGAGTGTGGATACGACAATAAAGCAAGGGACGAGGTGGGGATCGGAGAGAGTAGCGAGTACATTTTGTGGGATTACTGA 657 51.75 MAQSLQHPLSISSSSDPKKTKRIRDSSKHPIYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGTSAILNFPELADSLPRPVSIARRDVQAAAAKAAQMEIFDSRQSMSSSSSLSSLVSMMDLSSPPATNDSEELSKILELPSLGNAYDSYDLIREFEFFDSADCWAYPPPWLQSIGECGYDNKARDEVGIGESSEYILWDY 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2498008 2498664 + Bpe015082.1 Bpe04g00398 102207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00398 218 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Bpe04g00398 218 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 8 201 - -
Bpe04g00398 218 MobiDBLite consensus disorder prediction 1 16 - -
Bpe04g00398 218 SUPERFAMILY DNA-binding domain 31 89 IPR016177 GO:0003677
Bpe04g00398 218 CDD AP2 30 90 IPR001471 GO:0003700|GO:0006355
Bpe04g00398 218 Gene3D AP2/ERF domain 31 89 IPR036955 GO:0003700|GO:0006355
Bpe04g00398 218 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 201 - -
Bpe04g00398 218 MobiDBLite consensus disorder prediction 1 28 - -
Bpe04g00398 218 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Bpe04g00398 218 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Bpe04g00398 218 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Bpe04g00398 218 Pfam AP2 domain 30 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00398 Bpe-Chr4:2498008 Bpe08g00494 Bpe-Chr8:3241344 2.04E-60 dispersed
Bpe14g00516 Bpe-Chr14:4538438 Bpe04g00398 Bpe-Chr4:2498008 5.11E-79 wgd
Bpe02g00170 Bpe-Chr2:1171933 Bpe04g00398 Bpe-Chr4:2498008 3.67E-105 wgd
Bpe02g01182 Bpe-Chr2:15488200 Bpe04g00398 Bpe-Chr4:2498008 8.56E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21223 PF00847 AP2 7.80E-14 CL0081 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00398 K09286 - tcc:18587975 256.529