Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00400 TTGCAGTTGGAAGTAATGGCTGTGACTTCTTCATGTAAGGACGCAACTAAGATAGCGATGGATAACGGGAAGTACGTAAGGTACACACCTGAACAAGTGGAAGCCCTAGAGAGGCTTTATTACGAATGCCCCAAACCCAGTTCCATTCGCCGCCAACAGCTTATCAAAGAATGCCCCATTCTGTCCAACATAGAGCCCAAGCAGATCAAAGTTTGGTTCCAAAACAGAAGGTGTAGAGAGAAGCAGCGGAAAGAATCGTCGAGACTGCAAGCAGTGAACAGGAAGCTAACAGCCATGAACAGTCTACTAATGGAGGAAAACGATCGTTTGCAGAAACAAGTATCGCAGCTGGTGTACGACAACACCTATTTTCGCCAGCAAACTCAAAATGGTGCTTTAGCCTCCACAGACACAAGCTGTGATTCAGTGGTGACGAGTGGTCAGCACCATCAAACTCCTCAGCATCCATTAAAGGATGCCAGCCCTGCAGGACTTCTGTCCATTGCAGAGGAGACTTTAACAGAGTTTATCTCAAAGGCTACTGGAACTGCTGTGGAGTGGGTCCAATTGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTAATAGTTCTTCTGGAGTGGCAGCACGTGCATGTGGCCTTGTTGGTTTAGAACCAACTAGGGTAATAATTTTTCATCTGGTCTTTCGTAATCTAAATCAAATTGTTATAATTTTATTGAGCGAATATCACTGTGAACAGGTCGCTGAAATCCTCAAAGATCGGCCTTTGTGGTTACGAGATTGCCGAGCCGTGGATGTTCTAAATGTGCTGTCCACAGGAAATGGTGGAACCATTGAACTTCTTTACATGCAGCTCTTTGCGCCAACTACTTTGGCCCCTGCTCGTGATTTTTGGCTGCTTCGCTACACTTCTGTTTTAGAAGATGGCAGCCTCGTGGTCTGTGAAAGATCACTTGACAATACTCAGAATGGTCCAAACATGCCACCAGTACAGAATTTCGTACGAGCAGAAATGCTGCCGAGCGGGTATTTGATTAGACCTTGTGAAGGGGGAGGATCGATTATTCGTATTGTTGATCATATGGATTTAGAGCCTAGGAGCGTTCCTGAAGTGTTACGCCCACTGTACGAGTCATCTATTCTGCTTGCTCAGAGGACTACAATGGCAGCTTTGCGCCTTCTGAGGCAGATATCGCAAGAGATTTCTCAGCCAAATGTCTCGGGATGGGGAAAACGGCCGGCTGCACTACGCGGCCTTAGCCAAAAATTAATGAGGAGTTTTAACGAGGCCGTTAATGGGTTCACTGACGACGGATGGTCAATGCTTGAGAGTGATGGGGTCGATGATGTTACTCTTCTGGTCAACTCTTCCCCTTCCAAGATAATGGGAGGAGCTCTTCATTATGCCAATGGATTTCCATCAATGGCCTCAGCTGTTCTATGTGCCAAAGCTTCCATGTTATTTCAAGATGTTCCTCCGGCAATTCTTCTAAGATTTCTCCGAGAACACCGATCTGAATGGGCAGATAGTAGCATTGATGCTTATTCAGCTGCATCGATCAAAATGAGTCCACATGATGCCTTTCCTGGCGCTCAGCTGGGAACGTATGGTGGGCAGGTTATTCTTCCACTGGCTCACACCATCGAACATGAAGAGGCAAGCCGTCTTTTTGTGGAAGTCGTTAAAATCGAAAATATTAGCCACTATCGTGATGACATGCTCATGCCTGGCGACATCTTTCTTCTGCAATTAAATATTAAGAATGTGATTATTGAGAATTTTCATTTGTTGAATATCACTCATTTTTTATATTTTTTTGCCCGACAACAGCTTTGCAGTGGAATGGATGAGAATTCTGTAGGCACATGTGCTGAACTCGTATTTGCTCCCATTGATGCCTCCTTTTCCGACGATGCGCCTATTTTATCTTCTGGATTTGGCATCATTCCTGTAGATTCGAAGATGGACACCACAAGTCCAAATCGAACTCTCGATCTCACCTCAGCTCTAGATGTCGGAAAGGAAGGAAGCAAAGAGTCGGGTGATTATGCCGGACAATATGGAAAATCAAAATCGGTTTTGACAATCGCATTCCAATTTGCATTTCAAGCTCACCTTCAAGAGAATGTTGCAGCCATGGCCAGACAGTATGTGAGGAGGATCATAACTTCTGTCCAGCGAGTGGCTTTTGCTCTCTCACCTGCTCGTTTAGATTCTTTCTCGTCTCTTCATTCCCCTCAAACTCCCCAAGCTCTCTCACTCACTCGATGGATCTGCCATAGCTACCGGTGCTTTCTAGGGGTGGAACTGCTGAAGAATGAAGAAAGTGATTCTCTTCTGAAAACCCTTTGGCATCACTCAGATGCAGTTATGTGCTGTTCTTTAAAGCCAGTTCCAGTTTTTACATTTGCAAATCAGGCAGGACTGGATATGCTAGAGACAACCTTAATAGCTCTGAACGACATAACTCTGGAAATGATCTTTGATGATAATGGAAAGAAGACATTATGCTCTGAGTTCCCCCGCATACTTCAGCAGGGTTTTGTTTGCCTTCAAGCTGGGTTCTGCTTGTCGAGCATGGGGAGGCCGGTTTCATACGACAGAGCGGTGGCCTGGAAGGTGTTGGATGAAGATGAAAATGTCCAGTCTATCTGCTTCGTGTTCATCAACTGGTCTTTCGCCAAAAACTAG 2709 45.44 LQLEVMAVTSSCKDATKIAMDNGKYVRYTPEQVEALERLYYECPKPSSIRRQQLIKECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQAVNRKLTAMNSLLMEENDRLQKQVSQLVYDNTYFRQQTQNGALASTDTSCDSVVTSGQHHQTPQHPLKDASPAGLLSIAEETLTEFISKATGTAVEWVQLPGMKPGPDSIGIVAISNSSSGVAARACGLVGLEPTRVIIFHLVFRNLNQIVIILLSEYHCEQVAEILKDRPLWLRDCRAVDVLNVLSTGNGGTIELLYMQLFAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLDNTQNGPNMPPVQNFVRAEMLPSGYLIRPCEGGGSIIRIVDHMDLEPRSVPEVLRPLYESSILLAQRTTMAALRLLRQISQEISQPNVSGWGKRPAALRGLSQKLMRSFNEAVNGFTDDGWSMLESDGVDDVTLLVNSSPSKIMGGALHYANGFPSMASAVLCAKASMLFQDVPPAILLRFLREHRSEWADSSIDAYSAASIKMSPHDAFPGAQLGTYGGQVILPLAHTIEHEEASRLFVEVVKIENISHYRDDMLMPGDIFLLQLNIKNVIIENFHLLNITHFLYFFARQQLCSGMDENSVGTCAELVFAPIDASFSDDAPILSSGFGIIPVDSKMDTTSPNRTLDLTSALDVGKEGSKESGDYAGQYGKSKSVLTIAFQFAFQAHLQENVAAMARQYVRRIITSVQRVAFALSPARLDSFSSLHSPQTPQALSLTRWICHSYRCFLGVELLKNEESDSLLKTLWHHSDAVMCCSLKPVPVFTFANQAGLDMLETTLIALNDITLEMIFDDNGKKTLCSEFPRILQQGFVCLQAGFCLSSMGRPVSYDRAVAWKVLDEDENVQSICFVFINWSFAKN 902
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2516029 2520395 + Bpe015084.2 Bpe04g00400 102209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00400 902 Coils Coil 93 113 - -
Bpe04g00400 902 SUPERFAMILY Homeodomain-like 24 85 IPR009057 -
Bpe04g00400 902 CDD START_ArGLABRA2_like 162 403 - -
Bpe04g00400 902 SMART HOX_1 21 87 IPR001356 GO:0003677
Bpe04g00400 902 Pfam MEKHLA domain 759 899 IPR013978 -
Bpe04g00400 902 PANTHER CLASS III HD-ZIP PROTEIN CNA1 615 899 - -
Bpe04g00400 902 PANTHER CLASS III HD-ZIP PROTEIN CNA1 250 591 - -
Bpe04g00400 902 Gene3D - 206 404 IPR023393 -
Bpe04g00400 902 ProSiteProfiles 'Homeobox' domain profile. 19 83 IPR001356 GO:0003677
Bpe04g00400 902 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 250 591 IPR044830 GO:0003700
Bpe04g00400 902 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 615 899 IPR044830 GO:0003700
Bpe04g00400 902 Gene3D - 17 90 - -
Bpe04g00400 902 CDD homeodomain 24 84 IPR001356 GO:0003677
Bpe04g00400 902 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 10 228 IPR044830 GO:0003700
Bpe04g00400 902 SUPERFAMILY Bet v1-like 167 404 - -
Bpe04g00400 902 Pfam Homeodomain 24 82 IPR001356 GO:0003677
Bpe04g00400 902 Pfam START domain 250 402 IPR002913 GO:0008289
Bpe04g00400 902 Pfam START domain 168 226 IPR002913 GO:0008289
Bpe04g00400 902 ProSiteProfiles START domain profile. 158 386 IPR002913 GO:0008289
Bpe04g00400 902 SMART START_1 167 403 IPR002913 GO:0008289
Bpe04g00400 902 CDD bZIP 76 115 - -
Bpe04g00400 902 PANTHER CLASS III HD-ZIP PROTEIN CNA1 10 228 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00400 Bpe-Chr4:2516029 Bpe08g00442 Bpe-Chr8:2791068 0 dispersed
Bpe10g00665 Bpe-Chr10:13226686 Bpe04g00400 Bpe-Chr4:2516029 0 transposed
Bpe02g00166 Bpe-Chr2:1147422 Bpe04g00400 Bpe-Chr4:2516029 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21224 PF01852 START 9.10E-40 CL0209 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00400 K09338 - tcc:18587987 1338.94