Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00407 ATGGATCCTTGCCCTTTTGTGCGACTCACCGTTGGTAATCTTGCGCTTAAGGTGCCTGTGGCTTCCAAACCTGCTCGCTCCATTGTGCATCCATCTTCGTCTCTTTGCTTCTGTAAAATTAAGTTCAAGAGCTTTGCTCTCCAGACTGCAGTTGTTCCGTTTATCTCAACGGAGAATCAGTTTCCTGACGGTCAGGTTCAGTCCATTGCCGCTGCATTTCATTTAACCAAGTCCGATGTCGACAAACTCGCCGGTAAATCAATCTTCGCCGGGAAGCCTTGCCTTAAAATCTCCATATACAGCGGCAGAAGTGGCACGACCTGCGGTATGAACTCAGGAAGGCTATTGGGGAAGGTGTCCGTCCCTTTAGACTTGACTGGAACAGATACCAAGGCGTCGCTGTTCCACAATGGGTGGATTTCTGTAGGAAAAGAGTCCAAAGGATCGTTTGCACAGTTCCATCTGAACGTGAAGGCAGAGCCTGACCCACGATTCGTGTTTCAGTTTGACGGGGAGCCGGAGTGTAGCCCACAAGTGTTTCAGATTCAAGGCAATATTCGGCAACCTGTCTTCACTTGCAAATTCAGCTTCAGAACCGCCGACCGGACTCAGAGATCTAGGTCTTTGCCATCTGAATCAAGCAGTTCAAGAGGTTGGCTTACTTCATTCGGCAGTGAAAGGGAAAGGCCAGGAAAAGAGCGGAAGGGGTGGTCAATAACGGTCCATGATCTTTCTGGCTCGCCTGTCGCCGCTGCATCGATGGTCACCCCATTCGTTGCCTCACCAGGAACTGACAGAGTCAGCCGGTCTAACCCTGGTTCGTGGCTAATTCTCCGCCCCGGCGACAGCACCTGGAAACCATGGGGACGACTTGAGGCTTGGCGCGAGCGGGGAAGCTCGGACGGTCTCGGTTACCGTTTTGAGCTTCTTCCAGACACAAACAGCAGCATGAGCGCCGCCGGAATTGTCCTAGCCGAATCGACTCTCAGTACAAGTAGGGGAGGTAAGTTCGTCATTGACTTCGGGGGAAACTCAAACGGACGTTCCACTCCGGCGAACTCAACCTCACCGGCGTGCAGCCCCAGAGGCAGTGGCGACTTCGGCCATGGGTTATGGCCTTATTGCCTTTACAGAGGGTTTGTGATGTCGGCCAGCGTGGAAGGCGAAGGAAAATGCAGTAAACCCACGGTAGAGCTGAGCGTGCAGCACGTGAATTGCTCAGAAGATGCCGCAGCTTTCGTTGCATTAGCTGCAGCGATAGATCTGAGCATGGACGCCTGCAGGCTCTTCTCCCATAAACTTAGAAAAGAGCTCTGCACCCCATCAGACCTGCTGGGT 1338 52.84 MDPCPFVRLTVGNLALKVPVASKPARSIVHPSSSLCFCKIKFKSFALQTAVVPFISTENQFPDGQVQSIAAAFHLTKSDVDKLAGKSIFAGKPCLKISIYSGRSGTTCGMNSGRLLGKVSVPLDLTGTDTKASLFHNGWISVGKESKGSFAQFHLNVKAEPDPRFVFQFDGEPECSPQVFQIQGNIRQPVFTCKFSFRTADRTQRSRSLPSESSSSRGWLTSFGSERERPGKERKGWSITVHDLSGSPVAAASMVTPFVASPGTDRVSRSNPGSWLILRPGDSTWKPWGRLEAWRERGSSDGLGYRFELLPDTNSSMSAAGIVLAESTLSTSRGGKFVIDFGGNSNGRSTPANSTSPACSPRGSGDFGHGLWPYCLYRGFVMSASVEGEGKCSKPTVELSVQHVNCSEDAAAFVALAAAIDLSMDACRLFSHKLRKELCTPSDLLG 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2556409 2558184 - Bpe025621 Bpe04g00407 102216

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00407 446 MobiDBLite consensus disorder prediction 204 222 - -
Bpe04g00407 446 PANTHER OS08G0163500 PROTEIN 1 442 IPR010410 -
Bpe04g00407 446 MobiDBLite consensus disorder prediction 204 234 - -
Bpe04g00407 446 Pfam Protein of unknown function (DUF1005) 1 439 IPR010410 -
Bpe04g00407 446 PANTHER OS07G0133500 PROTEIN 1 442 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00407 - - - csv:101220969 783.867
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00159 Bpe04g00407 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00858 Bpe-Chr4:5691434 Bpe04g00407 Bpe-Chr4:2556409 3.44E-98 transposed
Bpe13g01271 Bpe-Chr13:17911207 Bpe04g00407 Bpe-Chr4:2556409 7.33E-138 transposed
Bpe02g00159 Bpe-Chr2:1107624 Bpe04g00407 Bpe-Chr4:2556409 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g584 Blo01g01782 . . Bda03g00441 Bpe02g00159 Bpe04g00407 Bma04g00418 Bma01g02567 . . Cma01g01450 Cma09g00617 . . . Cpe06g00476 . . . . . . . . . . . . . . . Cone4ag1261 Cone7ag0882 Cone17ag1146 Cone20ag0581 Lsi04g02313 Csa03g04531 Chy04g00172 . . . Bda11g00817 . . . . . Sed12g1374 Cmo01g01503 Cmo09g00602 . . . Car09g00547 . Cpe02g00499 Bhi09g02549 Tan01g3897 Cmetu04g0381 . Hepe01g2202 Mch11g0751 . Cla11g01463 Cam11g1515 Cec11g1554 Cco11g1549 Clacu11g1679 Cmu11g1496 Cre11g1917 . . . Cme04g00199
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004559 2 1 1 2 2 0 2 1 1 1 1 1 2 2 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00407 Bpe_Chr04 FPKM 35.284599 40.832188 24.757799 24.255205 22.259388 21.223928 23.059778 38.441452 39.159157 38.319534