Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bpe04g00412 | GTGGTGATGGATAATGGCATATTGCAAGTAACATTATCTAATCCGGAGGGAATTGTTACTGGAATACAGTATAATGGTGTTGACAATCTGCTTGAAATTCGTAACAATGAATCAAATAGAGGGTATTGGGACCTTGTTTGGAGCGCACCAGGAGGCAAAGGAATATTTGATGTGATTAAAGGAACGCGTTTCAGGGTGGTTGTAGAAAATGAAGAACAGGTGGAACTCTCATTTACGAGAATGTGGGAGCCTTCTCTTGCGGGCAAAGTTGTTCCTTTAAATATTGACAAAAGGTTTATCATGCTATGCGGTTCCTCGGGGTTTTATTCCTATGGAATTTATGAGCACTTAAAGCAGTGGCCTGATTTTGACCTTGGGGAAACCAGAATCGCGTTCAAACTCAGAAAAGACAAGTTTCAGTACATGGCAGTAGCGGACAACAGGCAAAGATTCATGCCTCTGCCTGATGACCGGCTAATTCCAAGATGCCAAACATTAGCTTATCCAGAAGCCGTTCTGCTCACCAATCCTCAAAATAAAGAACACAAAGGCGAGGTGGATGACAAATATCAGTATTCATGCGAGAACAAAGATCTAAGAGTTCATGGATGGATTTGCACCAATCCACCCACAGGGTTCTGGCAGATTACCCCAAGTGATGAATTTCGGTCTGGTGGGCCCCTCAAACAGAATCTAACATCACACGTGGGACCAACCACCCTAGCTGTCTTTCTCAGTGGTCACTATGCTGGACATGATTTGGTGCCAAAATTTAGAAATGGGGAACCATGGAAGAAGGTGTTTGGCCCTGTTTTTATTTATCTTAATTCTACAACTGCTGAAGATGATTCATTTTGGTTGTGGGAGGATGCTAAGATACAGATGATGACTGAAGTCCAAGGCTGGCCATATAGTTTTCCTGCTTCTAGGGATTTCCCAAAATTAGATCAGCGGGGTAATGTTCGTGGAAGGCTACTTGTCCGTGATAGCAAAACCAACATACCAGCAAGTGGTGCGTATGTTGGCTTAGGCCCACCAGGAGATGTAGGATCATGGCAGAGAGAGTGCAAGGATTATCAATTTTGGACGAGAGCAGATAATGGTGGCTGTTTTACTATTAACCATGTCCGTGCTGGAGACTATAATCTTTACTCATGGGTCCCTGGCTTTATTGGAGACTACCATTTTGATGCTGTCATCACCATAGTGGCTGAATCTTTCATCGAAATGGGTGATCTTGTATATCAACCGCCAAGAAGTGGGCCAACTTTGTGGGAAATAGGCATACCTGATCGTTCTGCTGCTGAGTTTTTTGTTCCTGATCCCAATCCGTCTCATATGAATAATCTATTTGTCAATCATCCTGACAGTCGTAAAACTAAAGCTTCACATTTTTTTTATTCTGCCAGGTTCAGACAGTATGGTTTATGGGAGAGATACACAGAATTGTATCCTCACGATGATTTGATTTACACAGTTGGTGTTAGTGACTTTAGTAAGGATTGGTTCTTTGCCCAGGTGCCCAGGAAGATAGACAATAACACATATCAAGGAACTACTTGGCAAATCAAATTTAATCTTGACAGTGTCAATCAGAAAATCATTTACACGCTCCGAGTTGCAATCGCCTCAGCTACTTTAGCTGAACTGCAGGTTCGTGTTAATGATCCTGGATCTAGGCGACCTTTATTCACCACGGGTTTGATAGGGAGAGACAATTCAATAGCAAGGCTTGGAATTCATGGCCTTTACTGGCTGTACAGTGTGGATATATCAGGTTCGAAACTTGTGGAAGGGGACAATACAATCTTTTTTACACAACCACGATGCACCAGTCCTTTCCAAGGCATCATGTATGATTATATTCGTTTAGAAGGCCCCCCTTATTGTAGTTCTTAG | 1899 | 42.6 | VVMDNGILQVTLSNPEGIVTGIQYNGVDNLLEIRNNESNRGYWDLVWSAPGGKGIFDVIKGTRFRVVVENEEQVELSFTRMWEPSLAGKVVPLNIDKRFIMLCGSSGFYSYGIYEHLKQWPDFDLGETRIAFKLRKDKFQYMAVADNRQRFMPLPDDRLIPRCQTLAYPEAVLLTNPQNKEHKGEVDDKYQYSCENKDLRVHGWICTNPPTGFWQITPSDEFRSGGPLKQNLTSHVGPTTLAVFLSGHYAGHDLVPKFRNGEPWKKVFGPVFIYLNSTTAEDDSFWLWEDAKIQMMTEVQGWPYSFPASRDFPKLDQRGNVRGRLLVRDSKTNIPASGAYVGLGPPGDVGSWQRECKDYQFWTRADNGGCFTINHVRAGDYNLYSWVPGFIGDYHFDAVITIVAESFIEMGDLVYQPPRSGPTLWEIGIPDRSAAEFFVPDPNPSHMNNLFVNHPDSRKTKASHFFYSARFRQYGLWERYTELYPHDDLIYTVGVSDFSKDWFFAQVPRKIDNNTYQGTTWQIKFNLDSVNQKIIYTLRVAIASATLAELQVRVNDPGSRRPLFTTGLIGRDNSIARLGIHGLYWLYSVDISGSKLVEGDNTIFFTQPRCTSPFQGIMYDYIRLEGPPYCSS | 632 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 2597790 | 2602048 | + | Bpe015097.1 | Bpe04g00412 | 102221 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bpe04g00412 | 632 | Pfam | Rhamnogalacturonate lyase family | 1 | 186 | IPR010325 | - | |
Bpe04g00412 | 632 | Pfam | Polysaccharide lyase family 4, domain III | 423 | 624 | IPR029411 | - | |
Bpe04g00412 | 632 | CDD | RGL4_C | 425 | 625 | - | - | |
Bpe04g00412 | 632 | Pfam | Polysaccharide lyase family 4, domain II | 337 | 406 | IPR029413 | - | |
Bpe04g00412 | 632 | Gene3D | - | 315 | 404 | - | - | |
Bpe04g00412 | 632 | SUPERFAMILY | Galactose mutarotase-like | 5 | 282 | IPR011013 | GO:0003824|GO:0005975|GO:0030246 | |
Bpe04g00412 | 632 | SUPERFAMILY | Galactose-binding domain-like | 420 | 625 | IPR008979 | - | |
Bpe04g00412 | 632 | Gene3D | - | 1 | 294 | IPR014718 | GO:0030246 | |
Bpe04g00412 | 632 | Gene3D | - | 420 | 625 | - | - | |
Bpe04g00412 | 632 | CDD | RGL4_N | 1 | 284 | - | - | |
Bpe04g00412 | 632 | SUPERFAMILY | Starch-binding domain-like | 314 | 404 | IPR013784 | GO:0030246 | |
Bpe04g00412 | 632 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 1 | 630 | - | - | |
Bpe04g00412 | 632 | CDD | RGL4_M | 317 | 413 | IPR029413 | - | |
Bpe04g00412 | 632 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 1 | 630 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bpe02g01140 | Bpe04g00412 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bpe02g01140 | Bpe-Chr2:14996907 | Bpe04g00412 | Bpe-Chr4:2597790 | 0 | dispersed | |
Bpe04g00412 | Bpe-Chr4:2597790 | Bpe15g00269 | Bpe-Chr15:14078914 | 0 | dispersed | |
Bpe04g00412 | Bpe-Chr4:2597790 | Bpe14g00479 | Bpe-Chr14:4246968 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bpe04g00412 | K18195 | - | jre:109004812 | 1052.74 |