Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00412 GTGGTGATGGATAATGGCATATTGCAAGTAACATTATCTAATCCGGAGGGAATTGTTACTGGAATACAGTATAATGGTGTTGACAATCTGCTTGAAATTCGTAACAATGAATCAAATAGAGGGTATTGGGACCTTGTTTGGAGCGCACCAGGAGGCAAAGGAATATTTGATGTGATTAAAGGAACGCGTTTCAGGGTGGTTGTAGAAAATGAAGAACAGGTGGAACTCTCATTTACGAGAATGTGGGAGCCTTCTCTTGCGGGCAAAGTTGTTCCTTTAAATATTGACAAAAGGTTTATCATGCTATGCGGTTCCTCGGGGTTTTATTCCTATGGAATTTATGAGCACTTAAAGCAGTGGCCTGATTTTGACCTTGGGGAAACCAGAATCGCGTTCAAACTCAGAAAAGACAAGTTTCAGTACATGGCAGTAGCGGACAACAGGCAAAGATTCATGCCTCTGCCTGATGACCGGCTAATTCCAAGATGCCAAACATTAGCTTATCCAGAAGCCGTTCTGCTCACCAATCCTCAAAATAAAGAACACAAAGGCGAGGTGGATGACAAATATCAGTATTCATGCGAGAACAAAGATCTAAGAGTTCATGGATGGATTTGCACCAATCCACCCACAGGGTTCTGGCAGATTACCCCAAGTGATGAATTTCGGTCTGGTGGGCCCCTCAAACAGAATCTAACATCACACGTGGGACCAACCACCCTAGCTGTCTTTCTCAGTGGTCACTATGCTGGACATGATTTGGTGCCAAAATTTAGAAATGGGGAACCATGGAAGAAGGTGTTTGGCCCTGTTTTTATTTATCTTAATTCTACAACTGCTGAAGATGATTCATTTTGGTTGTGGGAGGATGCTAAGATACAGATGATGACTGAAGTCCAAGGCTGGCCATATAGTTTTCCTGCTTCTAGGGATTTCCCAAAATTAGATCAGCGGGGTAATGTTCGTGGAAGGCTACTTGTCCGTGATAGCAAAACCAACATACCAGCAAGTGGTGCGTATGTTGGCTTAGGCCCACCAGGAGATGTAGGATCATGGCAGAGAGAGTGCAAGGATTATCAATTTTGGACGAGAGCAGATAATGGTGGCTGTTTTACTATTAACCATGTCCGTGCTGGAGACTATAATCTTTACTCATGGGTCCCTGGCTTTATTGGAGACTACCATTTTGATGCTGTCATCACCATAGTGGCTGAATCTTTCATCGAAATGGGTGATCTTGTATATCAACCGCCAAGAAGTGGGCCAACTTTGTGGGAAATAGGCATACCTGATCGTTCTGCTGCTGAGTTTTTTGTTCCTGATCCCAATCCGTCTCATATGAATAATCTATTTGTCAATCATCCTGACAGTCGTAAAACTAAAGCTTCACATTTTTTTTATTCTGCCAGGTTCAGACAGTATGGTTTATGGGAGAGATACACAGAATTGTATCCTCACGATGATTTGATTTACACAGTTGGTGTTAGTGACTTTAGTAAGGATTGGTTCTTTGCCCAGGTGCCCAGGAAGATAGACAATAACACATATCAAGGAACTACTTGGCAAATCAAATTTAATCTTGACAGTGTCAATCAGAAAATCATTTACACGCTCCGAGTTGCAATCGCCTCAGCTACTTTAGCTGAACTGCAGGTTCGTGTTAATGATCCTGGATCTAGGCGACCTTTATTCACCACGGGTTTGATAGGGAGAGACAATTCAATAGCAAGGCTTGGAATTCATGGCCTTTACTGGCTGTACAGTGTGGATATATCAGGTTCGAAACTTGTGGAAGGGGACAATACAATCTTTTTTACACAACCACGATGCACCAGTCCTTTCCAAGGCATCATGTATGATTATATTCGTTTAGAAGGCCCCCCTTATTGTAGTTCTTAG 1899 42.6 VVMDNGILQVTLSNPEGIVTGIQYNGVDNLLEIRNNESNRGYWDLVWSAPGGKGIFDVIKGTRFRVVVENEEQVELSFTRMWEPSLAGKVVPLNIDKRFIMLCGSSGFYSYGIYEHLKQWPDFDLGETRIAFKLRKDKFQYMAVADNRQRFMPLPDDRLIPRCQTLAYPEAVLLTNPQNKEHKGEVDDKYQYSCENKDLRVHGWICTNPPTGFWQITPSDEFRSGGPLKQNLTSHVGPTTLAVFLSGHYAGHDLVPKFRNGEPWKKVFGPVFIYLNSTTAEDDSFWLWEDAKIQMMTEVQGWPYSFPASRDFPKLDQRGNVRGRLLVRDSKTNIPASGAYVGLGPPGDVGSWQRECKDYQFWTRADNGGCFTINHVRAGDYNLYSWVPGFIGDYHFDAVITIVAESFIEMGDLVYQPPRSGPTLWEIGIPDRSAAEFFVPDPNPSHMNNLFVNHPDSRKTKASHFFYSARFRQYGLWERYTELYPHDDLIYTVGVSDFSKDWFFAQVPRKIDNNTYQGTTWQIKFNLDSVNQKIIYTLRVAIASATLAELQVRVNDPGSRRPLFTTGLIGRDNSIARLGIHGLYWLYSVDISGSKLVEGDNTIFFTQPRCTSPFQGIMYDYIRLEGPPYCSS 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2597790 2602048 + Bpe015097.1 Bpe04g00412 102221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00412 632 Pfam Rhamnogalacturonate lyase family 1 186 IPR010325 -
Bpe04g00412 632 Pfam Polysaccharide lyase family 4, domain III 423 624 IPR029411 -
Bpe04g00412 632 CDD RGL4_C 425 625 - -
Bpe04g00412 632 Pfam Polysaccharide lyase family 4, domain II 337 406 IPR029413 -
Bpe04g00412 632 Gene3D - 315 404 - -
Bpe04g00412 632 SUPERFAMILY Galactose mutarotase-like 5 282 IPR011013 GO:0003824|GO:0005975|GO:0030246
Bpe04g00412 632 SUPERFAMILY Galactose-binding domain-like 420 625 IPR008979 -
Bpe04g00412 632 Gene3D - 1 294 IPR014718 GO:0030246
Bpe04g00412 632 Gene3D - 420 625 - -
Bpe04g00412 632 CDD RGL4_N 1 284 - -
Bpe04g00412 632 SUPERFAMILY Starch-binding domain-like 314 404 IPR013784 GO:0030246
Bpe04g00412 632 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 630 - -
Bpe04g00412 632 CDD RGL4_M 317 413 IPR029413 -
Bpe04g00412 632 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 630 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g01140 Bpe04g00412 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01140 Bpe-Chr2:14996907 Bpe04g00412 Bpe-Chr4:2597790 0 dispersed
Bpe04g00412 Bpe-Chr4:2597790 Bpe15g00269 Bpe-Chr15:14078914 0 dispersed
Bpe04g00412 Bpe-Chr4:2597790 Bpe14g00479 Bpe-Chr14:4246968 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00412 K18195 - jre:109004812 1052.74