Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00413 ATGTTCGGTCATTCCCAACCCTTGAACATGCATAATCGGATATCTTCTGTTCCCGACGACGACGATGACGGCGCAGGCACCGATCCATTAGACAACCCTCTCATGCGCTACGATGCTCACGCATTGGAAGACGCTGCCGGCGCTGTTGGTGAAGATGTCGCGTCCGACGATGTGTACGTTCCCTCTGCTGGGGGTGTCGAATTGGCTGTTCAACGGGGCGATAGTACGAGCCAGCTCTCGCTTTCGTTTCGTGGCCAAGTTTATGTTTTTGACGCCGTCACGCCTGATAAGGTTCAAGCAGTATTACTGCTATTGGGAGGATACGAGCTATCTACGACCCAGACAGGCGTGGAAATGGGACAGAATCTGAGAAGTGTGATGGACCTCCCAAGGCGTTGTAGTCAACCACAGAGAGCCGCATCATTAAATAGGTTCAGGCAGAAAAGAAAAGAGCGATGCTTTGATAAGAAAGTTAGATATAGCGTCCGGCAGGAAGTTGCCCTCAGGATGCAACGTAACAAGGGACAATTTACTTCCTCTAAGAAGCCTGATGGAACTTATAGCTGGGATGCTGTCCAAGAGTTGGGTCAAGTTGAAAGCCCTCCAGAAACTTTATGTACACATTGTGGCATAAGCTCAAAAGCCACACCTATGATGCGGCGAGGCCCATCTGGACCGAGGTCTCTTTGCAATGCTTGTGGACTCTTTTGGGCAAACAGGGGTACTTTGAGAGATCTTTCTAAAAGAAACCAAGACCATCCTGTGTCCTTCACAGAGCAGGGTGAAGTTGATGCAACCGACTCCGACTCTGGAACACCCATCCATACCCAGAAAAATCTTGCTCACTTACCTAAAAGTGACCAATCAGCTCTAATGGCTGAGCACTAG 888 49.55 MFGHSQPLNMHNRISSVPDDDDDGAGTDPLDNPLMRYDAHALEDAAGAVGEDVASDDVYVPSAGGVELAVQRGDSTSQLSLSFRGQVYVFDAVTPDKVQAVLLLLGGYELSTTQTGVEMGQNLRSVMDLPRRCSQPQRAASLNRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSSKKPDGTYSWDAVQELGQVESPPETLCTHCGISSKATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRNQDHPVSFTEQGEVDATDSDSGTPIHTQKNLAHLPKSDQSALMAEH 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2603195 2606913 - Bpe015098.1 Bpe04g00413 102222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00413 295 SMART GATA_3 200 253 IPR000679 GO:0006355|GO:0043565
Bpe04g00413 295 MobiDBLite consensus disorder prediction 253 284 - -
Bpe04g00413 295 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 198 251 - -
Bpe04g00413 295 SMART tify_2 72 107 IPR010399 -
Bpe04g00413 295 ProSiteProfiles Tify domain profile. 72 107 IPR010399 -
Bpe04g00413 295 PANTHER GATA TRANSCRIPTION FACTOR 28 1 271 IPR045280 GO:0006355
Bpe04g00413 295 MobiDBLite consensus disorder prediction 248 295 - -
Bpe04g00413 295 ProSiteProfiles CCT domain profile. 138 180 IPR010402 GO:0005515
Bpe04g00413 295 Pfam tify domain 75 106 IPR010399 -
Bpe04g00413 295 ProSiteProfiles GATA-type zinc finger domain profile. 200 259 IPR000679 GO:0006355|GO:0043565
Bpe04g00413 295 Pfam CCT motif 138 180 IPR010402 GO:0005515
Bpe04g00413 295 CDD ZnF_GATA 206 252 IPR000679 GO:0006355|GO:0043565
Bpe04g00413 295 Pfam GATA zinc finger 206 242 IPR000679 GO:0006355|GO:0043565
Bpe04g00413 295 MobiDBLite consensus disorder prediction 1 32 - -
Bpe04g00413 295 Gene3D - 197 255 IPR013088 GO:0006355|GO:0008270
Bpe04g00413 295 PANTHER GATA TRANSCRIPTION FACTOR 25 1 271 - -
Bpe04g00413 295 ProSitePatterns GATA-type zinc finger domain. 206 233 IPR000679 GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g00146 Bpe04g00413 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00413 Bpe-Chr4:2603195 Bpe07g00312 Bpe-Chr7:2282903 4.23E-83 dispersed
Bpe14g00482 Bpe-Chr14:4304540 Bpe04g00413 Bpe-Chr4:2603195 7.72E-70 transposed
Bpe02g00145 Bpe-Chr2:998149 Bpe04g00413 Bpe-Chr4:2603195 1.92E-160 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21225 PF06203 CCT 1.70E-15 CL0281 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00413 - - jre:109021175 389.037