Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00419 ATGCAGGGAGATTATGCAGAGCCCGAGGGCGAACCTAGCGCCATGTTCTCCAAGCTTCATAATCCTCAACCTCAATCTTTCGTCCCCTTTTCTCACTCCTTTCAACTCTCTGCAAGAGAATGTCAGAACCCTGATGAAGAAGGAGAAGAAGAAAGATCACGCCCCGCCACTCTTACACCGTCCAAGAAGCCCGCCGAGCCAAGCTCTGGCGACGGCGCAACCATTGAAGTCCTCAAACGACCCAGGGGTCGTCCTCCTGGCTCAAAGAACAAACCCAAACCGGCTGCTGCTGTTGCTCCCGTCCCAGAGCCTTCGATGAGCTCTTATATTCTCGAAGTTACCGGAGGTAACGATGTCATCGGAGCCATTGCTGGCTTTTGTTGCCGAAAAAACATAGGCCTTACAGTTCTCAGTGGCTCCGGTACTGTTTCTGATGTCACTATTCGGCCCTCTACAGGAGGGCCAATGATGTTTCCTGGTCGGTTTGATATCATCTCCATCAGCGCGACCTTTCTCCCCAATTCGACCACCTTTTCTGTTCCCAGTGGCTTCGTTATCCATCTGGCTGGTAGTCACGGCCATATCTTCGGGGGTTTAGTCTGTGGAGAATTGATCGCCGATGGAACGGTGTTTGTGATAGCCTCTTCGTTCAATAATCCGTCTTATCACCGACTCCCGGACGAAGACTTGACCGGAAACTCGGCCGATGCAAGCGGCGGTGAGAAAAACTCTTCTCCGGGCCCCGATGCCCGAGATAGTGGCAGTCACGCTCCGGCGCAATCATGCGGCATGCTTATGTATGGCAGCCACGTTTCTTCCAATGTAGTTTGGGCTCCCACCGCAAGACCACCATTCGACGGCGATTCTAGCCGATAA 876 53.08 MQGDYAEPEGEPSAMFSKLHNPQPQSFVPFSHSFQLSARECQNPDEEGEEERSRPATLTPSKKPAEPSSGDGATIEVLKRPRGRPPGSKNKPKPAAAVAPVPEPSMSSYILEVTGGNDVIGAIAGFCCRKNIGLTVLSGSGTVSDVTIRPSTGGPMMFPGRFDIISISATFLPNSTTFSVPSGFVIHLAGSHGHIFGGLVCGELIADGTVFVIASSFNNPSYHRLPDEDLTGNSADASGGEKNSSPGPDARDSGSHAPAQSCGMLMYGSHVSSNVVWAPTARPPFDGDSSR 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2705796 2706671 + Bpe015104.1 Bpe04g00419 102228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00419 291 CDD DUF296 109 217 IPR005175 -
Bpe04g00419 291 MobiDBLite consensus disorder prediction 42 57 - -
Bpe04g00419 291 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 30 283 - -
Bpe04g00419 291 MobiDBLite consensus disorder prediction 1 100 - -
Bpe04g00419 291 ProSiteProfiles PPC domain profile profile. 103 238 IPR005175 -
Bpe04g00419 291 SUPERFAMILY AF0104/ALDC/Ptd012-like 105 230 - -
Bpe04g00419 291 MobiDBLite consensus disorder prediction 18 40 - -
Bpe04g00419 291 Gene3D - 106 238 - -
Bpe04g00419 291 Pfam Plants and Prokaryotes Conserved (PCC) domain 109 219 IPR005175 -
Bpe04g00419 291 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 30 283 IPR014476 GO:0003680
Bpe04g00419 291 MobiDBLite consensus disorder prediction 224 261 - -
Bpe04g00419 291 PIRSF ESCAROLA 23 281 IPR014476 GO:0003680
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00419 Bpe-Chr4:2705796 Bpe14g00488 Bpe-Chr14:4358975 1.67E-94 dispersed
Bpe02g00138 Bpe-Chr2:951701 Bpe04g00419 Bpe-Chr4:2705796 4.68E-110 wgd
Bpe02g01154 Bpe-Chr2:15141118 Bpe04g00419 Bpe-Chr4:2705796 1.60E-96 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00419 - - jre:109013700 291.967