Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00422 ATGGCCTCAATCTCGGGCATTTGCCCGTCTACCACGGTTCTCAAGCACAAAATGCTTCTCAAAAGAGCTAGTATTCCATCGCTCTCGTTTCATTCTACAGTTATCGACGAGAGTTTTGGTCGCCGCCTGGATCGGTCTACGATCAGGGCGATATCGGCTGATTTATCGAGCACTGATGGGCATTTGACAGAGCAGAAGAAGGGGTTGGAGAAAGACTCTCGATTGCTGTGGCGGAGGTACGTTGATTGGCTGTATCAGCATAAGGAGCTGGGGTTGTTTCTGGATGTTAGTAGGATCGGGTTCACGGATGAGTTCGCGAGGCAGATGGAGCCCCGTTTCCAGGCCGCTTTCCGAGCTATGGCGGAGCTCGAGAAGGGAGCGATCGCAAATCCCGATGAGGGTCGCATGGTTGGGCATTATTGGCTCAGAAACTCTAATCTTGCGCCTAACTCGTTCTTGAGGTTGCAAATTGAGAATTCTCTGGAAGATTTGTGCAAGTTTGCTAACGATGTCATTAGTGGTAAGATCAAGCCACCATCGAAAGGTCGCTTTACTCACATACTTTCTGTTGGGATTGGAGGATCAGCACTTGGTCCACAGTTCGTTGCCGAGGCATTAGCTCCTGATAATCCTCCTCTCCAGATAAGATTCGTTGACAATACTGATCCAGCAGGAATTGATCATCAGATTTCCCAGCTAGGACCAGAATTGGCTTCTACCCTTGTAATAGTAATTTCAAAGAGTGGAGGTACTCCTGAAACTAGAAATGGTTTGTTGGAAGTTCAGAAAGCATTTCGTGAAGCTGGACTGGATTTTGCAAAACAGCAGGGTGTTGCTGTTACACAAGAAAATTCACTGTTGGACAATACTGCAAAACTCGAAGGCTGGATAGCTAGGTTTCCCATGTTTGATTGGGTGGGTGGTAGAACATCTGAAATGTCGGCTGTTGGTCTTCTTCCTGCTGCACTTCAGGGAATCAACATTAAGGAAATGCTTGCCGGTGCAACGTTAATGGATGAGGCAACTAGAACAACTGCTATTGAAAATAATCCTGCAGCATTACTAGCATTATGCTGGTATTGGGCTTCTGATGGCGTAGGATCCAAGGATATGGTTGTCCTTCCATACAAGGACAGCCTATTGTTATTTAGTCGCTACTTACAACAGTTGGTTATGGAATCGCTTGGGAAAGAGTTTGACCTTGATGGAAATCGGGTGAATCAAGGACTTACTGTCTATGGAAACAAAGGGAGCACAGATCAGCATGCCTATATTCAACAATTGAGAGAAGGCGTCCACAACTTTTTTGTTACCTTCATTGAAGTACTACGTGATAGGCCTCCTGGGCATGATTGGGAGCTGGAGCCAGGTGTCACTTGTGGGGATTACCTGTTTGGCATGTTACAGGGAACAAGATCAGCTCTTTATGCAAATGATCGGGAGTCCATTACAGTCACTGTTCAAGAAGTCACTCCTAGATCTGTTGGTGCTCTTATTGCTCTTTATGAAAGAGCGGTTGGTTTATATGCTTCTCTTATCAACATTAATGCATATCATCAACCTGGAGTGGAAGCAGGGAAAAAAGCAGCCGGAGAAGTGTTAGCCCTTCAAAAGCGAGTATTGGCAGTACTTAATGAGGCTAGATATCCTTGGAGGTGCTTTTATCTCTCTCATTTTTTTTTTTTGCAATTTTGCCTCCTTTTTGGTATCGAAATGATTTACAAGATTATTGTTCACATGGCCGCCAATGATAGAGCAATAATAGCTGAAGGTAGCTGTGGTACGCCACGAAGCGTCAAGGTTTTCCTAGGCGAGTGCAGGGTCGATGAGCAGCTATTTGCATAG 1845 45.42 MASISGICPSTTVLKHKMLLKRASIPSLSFHSTVIDESFGRRLDRSTIRAISADLSSTDGHLTEQKKGLEKDSRLLWRRYVDWLYQHKELGLFLDVSRIGFTDEFARQMEPRFQAAFRAMAELEKGAIANPDEGRMVGHYWLRNSNLAPNSFLRLQIENSLEDLCKFANDVISGKIKPPSKGRFTHILSVGIGGSALGPQFVAEALAPDNPPLQIRFVDNTDPAGIDHQISQLGPELASTLVIVISKSGGTPETRNGLLEVQKAFREAGLDFAKQQGVAVTQENSLLDNTAKLEGWIARFPMFDWVGGRTSEMSAVGLLPAALQGINIKEMLAGATLMDEATRTTAIENNPAALLALCWYWASDGVGSKDMVVLPYKDSLLLFSRYLQQLVMESLGKEFDLDGNRVNQGLTVYGNKGSTDQHAYIQQLREGVHNFFVTFIEVLRDRPPGHDWELEPGVTCGDYLFGMLQGTRSALYANDRESITVTVQEVTPRSVGALIALYERAVGLYASLININAYHQPGVEAGKKAAGEVLALQKRVLAVLNEARYPWRCFYLSHFFFLQFCLLFGIEMIYKIIVHMAANDRAIIAEGSCGTPRSVKVFLGECRVDEQLFA 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2730405 2735556 - Bpe015108.1 Bpe04g00422 102231

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00422 614 Gene3D - 139 326 - -
Bpe04g00422 614 Hamap Glucose-6-phosphate isomerase [pgi]. 48 537 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bpe04g00422 614 Pfam Phosphoglucose isomerase 475 534 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bpe04g00422 614 Pfam Phosphoglucose isomerase 122 444 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bpe04g00422 614 PRINTS Glucose-6-phosphate isomerase signature 510 523 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bpe04g00422 614 PRINTS Glucose-6-phosphate isomerase signature 376 397 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bpe04g00422 614 PRINTS Glucose-6-phosphate isomerase signature 300 318 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bpe04g00422 614 PRINTS Glucose-6-phosphate isomerase signature 478 496 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bpe04g00422 614 PRINTS Glucose-6-phosphate isomerase signature 187 206 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bpe04g00422 614 PRINTS Glucose-6-phosphate isomerase signature 496 510 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bpe04g00422 614 Gene3D - 327 523 - -
Bpe04g00422 614 ProSiteProfiles Glucose-6-phosphate isomerase family profile. 46 543 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bpe04g00422 614 PANTHER GLUCOSE-6-PHOSPHATE ISOMERASE 1 610 - -
Bpe04g00422 614 SUPERFAMILY SIS domain 77 537 IPR046348 GO:0097367|GO:1901135
Bpe04g00422 614 CDD SIS_PGI_1 158 323 IPR035476 -
Bpe04g00422 614 CDD SIS_PGI_2 369 533 IPR035482 -
Bpe04g00422 614 ProSitePatterns Phosphoglucose isomerase signature 2. 510 527 IPR018189 GO:0004347|GO:0006094|GO:0006096
Bpe04g00422 614 PANTHER GLUCOSE-6-PHOSPHATE ISOMERASE 1 610 IPR001672 GO:0004347|GO:0006094|GO:0006096
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00422 K01810 GPI, pgi; glucose-6-phosphate isomerase [EC:5.3.1.9] - vvi:100262681 973.0
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g01160 Bpe04g00422 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00396 Bpe-Chr2:2562541 Bpe04g00422 Bpe-Chr4:2730405 6.09E-38 dispersed
Bpe02g01160 Bpe-Chr2:15224751 Bpe04g00422 Bpe-Chr4:2730405 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g489 . . Bda01g00916 Bda03g00461 . Bpe04g00422 Bma04g00436 . . Cmo12g00145 . . . Car12g00170 . . Cpe07g00158 . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe02g01160 . . . . . . Cma12g00187 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009057 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00422 Bpe_Chr04 FPKM 79.047867 85.587387 112.278519 109.474594 49.403416 55.270264 48.732243 174.993713 183.632507 156.838699