Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00431 ATGAGGAGGAAGCGGAAAGTAAGCGCAGAGGATGAAAATTCAAATCTACCATACATTGTGACATCAGCCAACGATTCTCGATCTTCAAATCTCAAGTCACATTACTCTCTAGAAGATTTTGTGAGGTTGAATAAGAGGTGTAAGGAAGATGCGGGTGCTGAACTTGTTCTTTCATGTAAGAGTAGGCTTGCTGGCGTTGCTACAGCTCCAACTTGTGGAACTTCTTCTCTAATTTCTAGTGGGAGGGGTCTCAAGAGGAAGATTGGTTGCATCGATGTAGCCACTCAGATGGGTAGGAGGAAGAAAAAGATCGAAGATGATTATATCTTGGGGGAAACACTTGGGCAGGGAAAATTCGGCGCTGTTTTCTTGTGTAAATCTAAGTGTAGTGGAGCTGAATTTGCTTGTAAGAGGCTTAAAAAAGGAGAGGAGACTGTTCATAGGGAGGTAGAGATTATGCAGCACTTATCTGGTCATCCTGGGGTTGTAACTTTGCAGGCTGTTTATGAGGAGGCTGAATGTTTTCATCTTGTAATGGAGTTATGCCCCTCAGGACGCTTAATTGATCAGATGTTGAGAGAGGGCCAATATTCAGAGCAACGTGCAGCAAATATATTCAAAGAAGTGATGTTCGTTATCAAGTATTGCCATGACATGGGAGTTGTGCATAGAGATATTAAGCCTGAGAATATTCTTCTTACAATATCTGGAGAAATAAAGCTTGCAGATTTTGGTCTGGCCGTGAGAATTTCAAATGGTCAGAGTTTGACAGGCTTAGCTGGAAGTCCAGCTTATGTTGCCCCTGAAGTGTTGTTGGGGAAATACTCCGAGAAGGTGGATATTTGGAGCGCTGGTGTCCTTTTGCATGCTCTTTTGGTAGGGGCGCTGCCTTTCCAAGGTGACTCCTTAGAAACGGTGTTTGAGGCTATCAAGAATGTGAAACTTGATTTTCACTCGGGTATGTGGAATTCAATATCCAAACCAGCTCGTGATCTTCTTGGAAGAATGCTGACTAGAGATGTTTCGGCAAGGATTACTGCAGAGGAAGTGCTTAGGCATCCATGGATATTGTTCTACACTGAACGATCATTAAAGTCGTTACCCTTCAAAACAAAAGTGAAAAACCAAGTGGTGGAATCCTCTAACCGTTCTGATATTCCTCAGAAAACTAAGAGCTCTCACATTAGGTATGGCGGTGTTTCATCTTCCGAAAGCTGCAACTCAGAAGATAGAGATGAGTGTGCTCTGGTGGATGCACTTGCCACTGCCATTTCACACGTAAGAATTTCTGAGCCAAAACGAACCAGGTTATGTAGCCCTGCGAGCCCAATCGAGCAGCAGTGCTCATCTAACATGAAGGCTAACAATCTCTGTAAAGCATTCTGA 1386 43.43 MRRKRKVSAEDENSNLPYIVTSANDSRSSNLKSHYSLEDFVRLNKRCKEDAGAELVLSCKSRLAGVATAPTCGTSSLISSGRGLKRKIGCIDVATQMGRRKKKIEDDYILGETLGQGKFGAVFLCKSKCSGAEFACKRLKKGEETVHREVEIMQHLSGHPGVVTLQAVYEEAECFHLVMELCPSGRLIDQMLREGQYSEQRAANIFKEVMFVIKYCHDMGVVHRDIKPENILLTISGEIKLADFGLAVRISNGQSLTGLAGSPAYVAPEVLLGKYSEKVDIWSAGVLLHALLVGALPFQGDSLETVFEAIKNVKLDFHSGMWNSISKPARDLLGRMLTRDVSARITAEEVLRHPWILFYTERSLKSLPFKTKVKNQVVESSNRSDIPQKTKSSHIRYGGVSSSESCNSEDRDECALVDALATAISHVRISEPKRTRLCSPASPIEQQCSSNMKANNLCKAF 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2779987 2782520 - Bpe015117.1 Bpe04g00431 102240

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00431 461 Gene3D Transferase(Phosphotransferase) domain 1 98 423 - -
Bpe04g00431 461 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
Bpe04g00431 461 PANTHER SERINE/THREONINE-PROTEIN KINASE PEPKR2 24 453 - -
Bpe04g00431 461 SMART serkin_6 108 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe04g00431 461 SUPERFAMILY Protein kinase-like (PK-like) 98 383 IPR011009 -
Bpe04g00431 461 CDD STKc_CAMK 107 355 - -
Bpe04g00431 461 MobiDBLite consensus disorder prediction 381 407 - -
Bpe04g00431 461 PANTHER SERINE/THREONINE-PROTEIN KINASE 24 453 - -
Bpe04g00431 461 ProSiteProfiles Protein kinase domain profile. 108 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe04g00431 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672|GO:0006468
Bpe04g00431 461 Pfam Protein kinase domain 110 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00431 - - - csv:101207957 687.182
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00129 Bpe04g00431 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00431 Bpe-Chr4:2779987 Bpe03g00309 Bpe-Chr3:4482131 9.61E-83 dispersed
Bpe02g00938 Bpe-Chr2:8275192 Bpe04g00431 Bpe-Chr4:2779987 9.23E-11 transposed
Bpe02g00129 Bpe-Chr2:880026 Bpe04g00431 Bpe-Chr4:2779987 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g473 . Blo12g00717 . Bda03g00469 Bpe02g00129 Bpe04g00431 Bma04g00444 Bma01g02597 . . Cma01g01477 Cma09g00581 Car01g01239 . . Cpe06g00444 . . . . . . . . . . . . . . . Cone4ag1314 Cone7ag1257 . . Lsi04g02263 Csa03g04473 Chy04g00228 . . . Bda11g00784 . . . . . . Cmo01g01533 Cmo09g00568 . . . Car09g00512 . Cpe02g00353 Bhi09g02475 . . . . Mch11g0692 . Cla11g01407 Cam11g1464 Cec11g1492 Cco11g1488 Clacu11g1625 Cmu11g1442 Cre11g1861 . . . Cme04g00254
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004556 3 2 1 2 2 0 2 0 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 0 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63288 PF00069 Pkinase 4.90E-69 CL0016 Bpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00431 Bpe_Chr04 FPKM 587.993225 602.75415 271.761658 262.189941 1100.233643 1243.20105 1042.068481 268.589081 281.182953 259.452148