Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00450 ATGAAGGACTCCGTTATGATTGAAGACGAAGTTAACTCCGTCAATAAAACATTGGCTTGCCCCATATGTTATAATCCGATAATTTCAAGTGCTAATGCGGCCTTATCAGTGAATTCGACATATGGTTCTAATTTACAATGTACCACGTGTAAAAAGTCTTACTTCGGCAGTGAAACTCATCTTGAGCTAACAGTAGCAAGTGGGGCTAAGAACTATGGGGAAGTGATGCCAGCTTCGACTGAGCTTTTCAGAGTTCCATTGGTATCATTCCTCTATGAAAGAGGCTGGCGCCAAGCTTTTTCCGTATGGGGTGGTTTTCCTGGCCCGGATAAGGAGTTTGAGTTAATAAAGACTTACTTGAAGCCAGTCCTGGGTGGAAACATTGTGGATGCAAGTTGTGCAAGTGGGTTGTTTTCAAGACTTTTTGCCAAGAGTGGATTATTTCATACTGTTGTGGCTTTGGATTACTCAGAAAACATGTTGCGGCAGTGCTATGACTTCATTAAGCAAGAGGATAACTTTCCCGAGGAGAAAATAGTGTTGGTAAGAGCTGATATCTCTCGACTCCCTTTTACGTCAAGTTCTGTTGATGCTGTGCATGCCGGAGCTGCCCTACACTGCTGGCCTTCACCATCAGCTGGTGTTGCTGAAATAAGTCGAGTTCTGCGACCCGGAGGAGTGTTTGTTGCCAGCACCTATATATTGGATGGACCTTTTGCTTTCATACCCTACTTAAAGGCTCAGCGCAAGCGTGTAAGGCAACTAAGTGGCAGCCATATTTTCTTATCTGGAGGCGAATTAGAAGATCTCTGCACAGCCTGCGGGTTAGTTGGTTTCACAAGTATAAGGAGTGGTCTTTTTGTGATGATCTCTGCTACAAAACCACCTTAA 891 44.11 MKDSVMIEDEVNSVNKTLACPICYNPIISSANAALSVNSTYGSNLQCTTCKKSYFGSETHLELTVASGAKNYGEVMPASTELFRVPLVSFLYERGWRQAFSVWGGFPGPDKEFELIKTYLKPVLGGNIVDASCASGLFSRLFAKSGLFHTVVALDYSENMLRQCYDFIKQEDNFPEEKIVLVRADISRLPFTSSSVDAVHAGAALHCWPSPSAGVAEISRVLRPGGVFVASTYILDGPFAFIPYLKAQRKRVRQLSGSHIFLSGGELEDLCTACGLVGFTSIRSGLFVMISATKPP 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2883665 2886073 + Bpe015136.1 Bpe04g00450 102259

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00450 296 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 99 283 IPR029063 -
Bpe04g00450 296 Pfam Methyltransferase domain 130 229 IPR013216 GO:0008168
Bpe04g00450 296 Gene3D Vaccinia Virus protein VP39 83 294 IPR029063 -
Bpe04g00450 296 PANTHER METHYLTRANSFERASE 13 295 - -
Bpe04g00450 296 PANTHER OS08G0411200 PROTEIN 13 295 - -
Bpe04g00450 296 CDD AdoMet_MTases 127 235 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00450 - - - mnt:21404420 459.914
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00450 Bpe-Chr4:2883665 Bpe13g01160 Bpe-Chr13:17039868 6.63E-105 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g396 . Blo12g00703 . Bda03g00494 . Bpe04g00450 . . . . . Cma09g00646 . . . Cpe06g00506 . . . . . . . . . . . . . . . Cone4ag1345 Cone7ag1586 . . Lsi04g02345 Csa03g04566 . . . . . . . . . . Sed04g0529 . Cmo09g00629 . . . Car09g00573 . . Bhi09g02609 Tan01g3959 . . Hepe01g2238 Mch11g0785 . Cla11g01496 Cam11g1552 Cec11g1584 Cco11g1580 Clacu11g1710 Cmu11g1529 Cre11g1945 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005033 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 3 2 1 1 1 1 6 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00450 Bpe_Chr04 FPKM 44.05777 47.969574 127.589996 132.459579 68.558441 74.385124 68.72068 69.199905 69.509842 69.223633