Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00454 ATGGAGCGGTTTCAAAACGACGATATTGCATATTCTGTCGACAGCTTATACGACGTGACTGATTTCGATGAAGCTGATCCTTTCGGAGAAGACGCACCAGTGGTGACCGATAATTGTGATCTGTCAGACTCTGACTTTGAGGACGACTTCGATTCTCAGAGCCATTCAAAAACTGATACTTCTGCTCCGGAAGCGAAAAATGGCAAAGACATCCAAGGAATTCCTTGGGAGAGGCTTAATTTTTCCCGAGATGAGTTCCGCCAAACGCGTTTAAAGCAGTATAAGAACTACGAGAACATCTCTCGCTCTCGCGAAGAGCTAGAAAAGGAGTGCCTACAAGTAGGAAGGACGAAGACCTTCTATGACTTTCAGTTAAATACGAGACTTGTCAAACCAACAATTGTGCATTTTCAGGTAGAGCCTTTATCCATAGCTTTACAAGTTAAAGTTGCTATTATTAATGATTATGGTCATTTTATTTATTGTCTACGTTTGCAGTTAAGAAATCTTTTGGGCGCAACCTCAAAGCATGATGTGTACCTAATGCAGAACTATTCCATAATGCACTGGTCAGCGTTGCGTCGAAGTGCTACTGAAATGCTTAATGTTGCTCGACCTATTATTCCCACTTCGAAATTTCCAGGAGCAATGTCTCAGTCAGTCACGAGAGTGCAAATTAGCACCATGGCAGTCAAGGAAAATTTAATTGTAGCTGGTGGATTTCAGGGGGAACTTATTTGCAAGTATTTGAACCATCAAGGAGTTGCATTTTGCACAAAAGTAACTACAGATGATAATGCAATAACAAATACAGTCGATATATTTTCTAATACAAATGGCGCGAATAGGATCATCACTGGGAATAATGATGCTCAAGTTAGGATTTTTGACGCAGAGAAGTTTCTTTGCCTTAGCCGCTTCTCATTTCCTTGGTCTGTTAATAATGCATCTGTTAGCCCAGATGGTAAGTTATTTGCGGTTCTTGGGGACAGCTTGGAGTGCTTGATGGCAGATGCCAACTCTGGAAAAGTCGTTGGAAGTCTCAAAGGACATTGGGACTATTCATTTTCCTCTGCTTGGAATCCAGAAGGACATATTTTGGCAACTGGCAGTCAAGATGCTACCTGCAGATTGTGGGATGTCAGAAATTTGTCCCAATCTCTAGCCGTTCTTAAAGGAAGAATGGGGGCTATAAGAGCCTTACAGTTTACTGCGGATGGTCGATTTTTGGCAATGGCTGAGCCAGCTGACTTTGTTCATATTTTTGATGCACGCGTGGGCTACACTCGAGAGCAAGAAATAGATTTCTTCGGCGAAATTGCAGGCATCTCTTTTAGCCCCGACACAGAAGCACTCTTTATTGGGGTGTCGGATCGCACATACGGCAGCTTAATAGAGCTAAATCGAAGACATTACAACAGGTATTTAGACTCCATCTTCTAG 1443 42.34 MERFQNDDIAYSVDSLYDVTDFDEADPFGEDAPVVTDNCDLSDSDFEDDFDSQSHSKTDTSAPEAKNGKDIQGIPWERLNFSRDEFRQTRLKQYKNYENISRSREELEKECLQVGRTKTFYDFQLNTRLVKPTIVHFQVEPLSIALQVKVAIINDYGHFIYCLRLQLRNLLGATSKHDVYLMQNYSIMHWSALRRSATEMLNVARPIIPTSKFPGAMSQSVTRVQISTMAVKENLIVAGGFQGELICKYLNHQGVAFCTKVTTDDNAITNTVDIFSNTNGANRIITGNNDAQVRIFDAEKFLCLSRFSFPWSVNNASVSPDGKLFAVLGDSLECLMADANSGKVVGSLKGHWDYSFSSAWNPEGHILATGSQDATCRLWDVRNLSQSLAVLKGRMGAIRALQFTADGRFLAMAEPADFVHIFDARVGYTREQEIDFFGEIAGISFSPDTEALFIGVSDRTYGSLIELNRRHYNRYLDSIF 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2905584 2909325 - Bpe015141.2 Bpe04g00454 102263

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00454 480 Pfam WD domain, G-beta repeat 343 380 IPR001680 GO:0005515
Bpe04g00454 480 PANTHER OS03G0386000 PROTEIN 1 480 - -
Bpe04g00454 480 ProSiteProfiles Trp-Asp (WD) repeats profile. 348 389 IPR001680 GO:0005515
Bpe04g00454 480 ProSitePatterns Trp-Asp (WD) repeats signature. 367 381 IPR019775 -
Bpe04g00454 480 SUPERFAMILY WD40 repeat-like 219 462 IPR036322 GO:0005515
Bpe04g00454 480 MobiDBLite consensus disorder prediction 46 69 - -
Bpe04g00454 480 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 1 480 - -
Bpe04g00454 480 SMART WD40_4 300 338 IPR001680 GO:0005515
Bpe04g00454 480 SMART WD40_4 242 297 IPR001680 GO:0005515
Bpe04g00454 480 SMART WD40_4 384 423 IPR001680 GO:0005515
Bpe04g00454 480 SMART WD40_4 341 380 IPR001680 GO:0005515
Bpe04g00454 480 Gene3D - 184 467 IPR015943 GO:0005515
Bpe04g00454 480 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 348 383 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00454 - - - qsu:112038073 671.774
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00454 Bpe-Chr4:2905584 Bpe11g00613 Bpe-Chr11:4663659 4.69E-170 dispersed
Bpe04g00454 Bpe-Chr4:2905584 Bpe05g01094 Bpe-Chr5:23370306 6.01E-160 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g386 . Blo12g00699 . Bda03g00499 . Bpe04g00454 . . Cmo05g00510 Cmo12g00116 . . . Car12g00136 . . Cpe07g00123 Bhi04g00741 . . . . . . Cla08g01095 Cam08g1549 Cec08g1122 Cco08g1249 Clacu08g1251 . Cre08g1033 . . . Cone20ag0496 . Csa04g01842 . Cme03g01509 . . . . . . . . . . Cmo09g00636 Cma12g00147 Cma05g00488 Car05g00436 . Cpe11g00427 . . . . . . . . . . . . . . . Lsi08g00951 . Chy07g00699 Cme07g00918
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001293 1 12 1 1 1 1 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 1 2 2 5 2 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00454 Bpe_Chr04 FPKM 42.534782 33.057552 49.829605 48.776024 32.425945 38.990063 35.414845 62.039555 74.153244 79.585518