Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00455 ATGGGTTCTCGAGGACGAGTATTATTTGATCTTAATGAACCTCCTACTGAGGATATTGAAGTTGGTGATGGGGTTGTCTACCAGCCACAAAAGGCTTTTCCATCTTCAAATCTCCACACATCAGACCTGATGTCGGAGTCTGGCAGTAGGCAAAGAATAATAAATAATTTTGCCTTTTCACATGCTTCGTCTGTATCTGGGTTTCAGCCTTTTGTTCGAGCAAAATCTGCTCACCACCCTGAGGTGGATGAAGAACTTGAAAAACTAGACCATCATAACTCCAAAATTGCATCTTCATCCAATTCACATAAGGATGAGATGACACCACCATTTGTATCAGGCTCTAGAGAGTCTCAACTCGAGGATAGGGAAGAAGGAGAATGGTCTGATGCTGAGGGCTCTGCCGATGCATATACTGGTTCTAATCTGCAGGATCAGTCTAAAAATGCACAAGAGCAAGAATTACCCTCTGTCTCCAGGGGTATGGTCGAGAACTGTTCTTTAAATCCTCCAAGTTCTGATTTTATCACGGATGAAAGTGCTAGTCTTGTTTCTGTAGAATCATACATAAACCATGTTAACGGAAAAAGCAATGGGAGCAGGACTTTGGAATGGAATGTTAAAGGTGAAATACCCATGGATGGCCAGGCTGACCTTGGCTCTGGAAAAAACCATAGAGAAGTTAAAGGTATTGAAGCAAGTCATGCACCTAAATGTGCTAATAATTCTGGTAAAAGAAAAGTAGATCAACAACAAGAAGCTAAGCTTGGAAAGAAACGGAGCAGACAAACTATGTTTCTTAACTTAGAAGATGTAAAGCAGGCTGGCCCCATGAAATCCTCAACCCCCAGGAAGCAGACGTCTCTGCCACCAACCACACGTATAATGAAAGAAATTCGTATTACAACTCCACTCATTGAACGTACTATTGAAAAACAGCAAGCCTCTAACAAGGATTTAAAACAGGGGGACATATCATGTGATGAAGGTGGCATGGAATCTGGAGAACCTAAATCTGATTCAAACGGTGATGGTAACTCTGGTCTCTTAGCGCCTAGTAAGCTAAACAGCAATGGAGATTTTTCTACAGACCCTTCATTGCCACCCTTTCCTAAACAGGGTTTGTGGAAACAGCCAACAGATTCTAGACAGTTAAAGAATGCTCAGGTTGGCAATAGGAAACCAGCGAAAACAAGTCAAAATTCAACGGAGATAAAAATAGTGAGTAAGAAACATCTCCAGGTAAAAAAGTCGAATGTTGTTAGTACTCCATATCAGGACACATCAGTTGAAAGACTCATACGGGAAGTTACTAATGAGAAGTTTTGGCATACTCCAGAGGAGACCGAATTTCAGTGTGTGCCTGGTCGATTTGAATCTGTAGAAGAATATGTTGGAGTGTTTGAACCTTTACTGTTTGAGGAATGTCGGGCGCAGCTTTACAGTACGTGGGAGGAGTTAACTGAAACAGTATCAAGGGATACACATGTGGTGGTTCGCATAAAGAATGTTGAAAGAAGAGAAAGAGGGTGGTATGATGTGATAGTTCTTCCTGTGCATGAGTGCAAGTGGTCATTCAAGGAGGGTGATGTGGCAATTCTTTCATCTCAAAGACCGGGATCAGTTAGATCAAAGCGAAATAATACATCATCAGTGGAAGAAAATGATGAGCCTGATTTTAGTGGCCGTGTTGCGGGAACAGTTCGAAGACACATTGCTATTGATACTCGCGATCCTCCTGGGGCAATCCTTCATTTTTATGTTGGGGACTCTTATGATTCCAATAAAGTTGATGACGATCATTTATTGAGAAAACTTCAGCCCAAAGGGGTATGGTATCTGATGGTGCTTGGTTCCATTGCGACCACCCAGCGGGAGTACATTGCTTTGCACGCATTTCGCCGTCTGAACTCACAGATGCAAACTTCAATTCTTCAACCGTGTCCAGAGCAATTCCCAAGATATGAACAGCAGCCTCCTGCCATGCCAGAGTGCTTTACTCAGAACTTTGTTGATCATTTACATCGAAGCTTTAATGGGCCACAATTAGCAGCTATTCAATGGGCCGCAATGCATACAGCTGCTGGTACAGGTAGTGGGACAGCAAAAAGGCAAGATCCATGGCCTTTTACCCTTGTACAAGGTCCTCCAGGAACAGGTAAGACTCACACAGTCTGGGGAATGCTAAATGTTATCCATCTGGTACAATATCAGCACTACTATACTTCTTTGCTAAAGAAATTAGCTCCTGAAAGCTATAAGCAAGCTAACGATAGCAGTTTAGACAATGTTATGATTGGATCAATAGACGAGGTGCTTCAAAACATGGATCAGAATCTCTTCCGCACGCTTCCTAAGCTATGTCCAAAACCAAGAATGTTAGTTTGTGCACCCTCTAATGCTGCCACAGATGAGCTTCTAGCACGTGTTCTGGATCGTGGATTCATTGATGGTGAAATGAAAGTTTATCGGCCTGATGTAGCTAGAGTTGGCGTCGACTCTCAAACTCGCGCTGCTCAAGCAGTGTCAGTGGAGAGGAGAACAGAGCAGCTTTTGATGAAAAGCCGAGAGGAAATTTTAGGATGGATGCACCAGCTCAAAGGTCGTGAAGCTCAATTATCTCAGCAGATATCGATTCTTCAAAGAGAACTGAATCTCACTGCTGCTGCTGTTAGATCTCAAGGTTCAGTTGGTGTGGATCCTGATGTGCTGGTAGCTCGAGACCAAAATCGAGACTCATTGTTGCAGAACCTTGCTGCTGTTGTTGAAGGGAGGGACAAAATCTTAGTTGAGATGTCTCGCCTTCTCATCTTAGAAAGCAAGTTCAGAGCTGGCAGCAACTTCAATTTGGAAGAAGCGCGTGCTAATCTAGAGGCAAGCTTTGCAAATGAGGCTGAGATTGTTTTTACTACTGTCTCCAGCAGTGGTCGCAAATTGTTCTCTCGACTTACTCATGGTTTTGATATGGTGGTTATAGATGAAGCAGCTCAAGCCAGTGAAGTGGCTGTTCTTCCTCCTCTGTCTCTAGGTGCAGCACGATGTGTACTTGTCGGCGATCCTCAGCAGCTTCCAGCGACAGTTATCAGCAAGGCTGCTGGAACCTTGCTTTACAGTAGGAGCCTTTTTGAGAGGTTCCAGCAGGCTGGATGTCCAACTATGTTGTTATCTATACAGTATAGAATGCATCCTCAAATTCGAGATTTTCCCTCAAGGTACTTTTATCAAGGACGCCTTACTGACAGTGAAAGCATTGCTAATTTACCTGACGAAGCATATTACAAAGATGACTTACTTAAACCTTACATCTTTTATGATATTACCCATGGACGGGAATCTCACAGGGGAGGGTCAGTTTCCTATCAAAATATACATGAGGCACAATTTTGCCTTCGATTGTATGAGCACCTTCAGAAAACTTTGAAATCATTGGGGATGGGAAAAGTTTCTGTTGGCATTATCACACCGTATAAGCTACAACTGAAATGTCTTCAACGCGAGTTTGAAGATGTTTTGAGTGCAGAAGAAGGAAAAAACTTGTACATAAACACTGTTGATGCATTTCAAGGCCAAGAGCGTGATGTGATCATCATGTCCTGCGTTCGAGCTTCAGGTCATGGTGTTGGCTTTGTTGCAGATATTCGTCGCATGAATGTCGCACTTACTCGTGCGAGAAGGTCTCTTTGGGTAATGGGTAATGCTAATGCTTTGGTGCAATCGGATGACTGGGCCGCATTGATCACTGATGCCAAAGGAAGAAACTGTTATTTGAACATGGACTCTCTTCCTAAGGACTTTCTGGTATCCAAGGGTCCTGCATATGCTGCATTGCCAGGAAAGATCTCAAATATGAGAGGTTTGAGATCTACTGGGACAAGACACAGGTCTTTGGACTTGCACGTAGAGTCCAGGTCTGGAACTCCGTCAGAAGATGACGAGAAGTCAAATTCATCAGTTATCTCTAGGAATGGAATCCATCGGCCCTTAAAACCACCTCTTGAGAATTCGTTGGATGACTTTGATCAATCAGGTGATAGAACTAGAGATTCCTTGCCACATGGCACACAAAAGAAGCAAAGTTCTGCTGGGAATGGGGGGAAGAGAGAGAGTTAG 4110 43.33 MGSRGRVLFDLNEPPTEDIEVGDGVVYQPQKAFPSSNLHTSDLMSESGSRQRIINNFAFSHASSVSGFQPFVRAKSAHHPEVDEELEKLDHHNSKIASSSNSHKDEMTPPFVSGSRESQLEDREEGEWSDAEGSADAYTGSNLQDQSKNAQEQELPSVSRGMVENCSLNPPSSDFITDESASLVSVESYINHVNGKSNGSRTLEWNVKGEIPMDGQADLGSGKNHREVKGIEASHAPKCANNSGKRKVDQQQEAKLGKKRSRQTMFLNLEDVKQAGPMKSSTPRKQTSLPPTTRIMKEIRITTPLIERTIEKQQASNKDLKQGDISCDEGGMESGEPKSDSNGDGNSGLLAPSKLNSNGDFSTDPSLPPFPKQGLWKQPTDSRQLKNAQVGNRKPAKTSQNSTEIKIVSKKHLQVKKSNVVSTPYQDTSVERLIREVTNEKFWHTPEETEFQCVPGRFESVEEYVGVFEPLLFEECRAQLYSTWEELTETVSRDTHVVVRIKNVERRERGWYDVIVLPVHECKWSFKEGDVAILSSQRPGSVRSKRNNTSSVEENDEPDFSGRVAGTVRRHIAIDTRDPPGAILHFYVGDSYDSNKVDDDHLLRKLQPKGVWYLMVLGSIATTQREYIALHAFRRLNSQMQTSILQPCPEQFPRYEQQPPAMPECFTQNFVDHLHRSFNGPQLAAIQWAAMHTAAGTGSGTAKRQDPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYTSLLKKLAPESYKQANDSSLDNVMIGSIDEVLQNMDQNLFRTLPKLCPKPRMLVCAPSNAATDELLARVLDRGFIDGEMKVYRPDVARVGVDSQTRAAQAVSVERRTEQLLMKSREEILGWMHQLKGREAQLSQQISILQRELNLTAAAVRSQGSVGVDPDVLVARDQNRDSLLQNLAAVVEGRDKILVEMSRLLILESKFRAGSNFNLEEARANLEASFANEAEIVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQASEVAVLPPLSLGAARCVLVGDPQQLPATVISKAAGTLLYSRSLFERFQQAGCPTMLLSIQYRMHPQIRDFPSRYFYQGRLTDSESIANLPDEAYYKDDLLKPYIFYDITHGRESHRGGSVSYQNIHEAQFCLRLYEHLQKTLKSLGMGKVSVGIITPYKLQLKCLQREFEDVLSAEEGKNLYINTVDAFQGQERDVIIMSCVRASGHGVGFVADIRRMNVALTRARRSLWVMGNANALVQSDDWAALITDAKGRNCYLNMDSLPKDFLVSKGPAYAALPGKISNMRGLRSTGTRHRSLDLHVESRSGTPSEDDEKSNSSVISRNGIHRPLKPPLENSLDDFDQSGDRTRDSLPHGTQKKQSSAGNGGKRES 1369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2914149 2920408 + Bpe015142.1 Bpe04g00455 102264

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00455 1369 MobiDBLite consensus disorder prediction 1282 1369 - -
Bpe04g00455 1369 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN-RELATED 1 1333 - -
Bpe04g00455 1369 MobiDBLite consensus disorder prediction 76 166 - -
Bpe04g00455 1369 MobiDBLite consensus disorder prediction 248 266 - -
Bpe04g00455 1369 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 704 1261 IPR027417 -
Bpe04g00455 1369 MobiDBLite consensus disorder prediction 312 335 - -
Bpe04g00455 1369 Pfam AAA domain 1037 1233 IPR041679 -
Bpe04g00455 1369 MobiDBLite consensus disorder prediction 537 560 - -
Bpe04g00455 1369 PANTHER DNA2/NAM7 HELICASE FAMILY 1 1333 IPR045055 -
Bpe04g00455 1369 MobiDBLite consensus disorder prediction 279 293 - -
Bpe04g00455 1369 MobiDBLite consensus disorder prediction 377 403 - -
Bpe04g00455 1369 CDD SF1_C_Upf1 1061 1250 IPR041679 -
Bpe04g00455 1369 Gene3D - 610 1058 IPR027417 -
Bpe04g00455 1369 MobiDBLite consensus disorder prediction 135 166 - -
Bpe04g00455 1369 Coils Coil 863 883 - -
Bpe04g00455 1369 MobiDBLite consensus disorder prediction 100 115 - -
Bpe04g00455 1369 Gene3D - 1059 1265 IPR027417 -
Bpe04g00455 1369 MobiDBLite consensus disorder prediction 1338 1352 - -
Bpe04g00455 1369 MobiDBLite consensus disorder prediction 339 364 - -
Bpe04g00455 1369 MobiDBLite consensus disorder prediction 1290 1316 - -
Bpe04g00455 1369 MobiDBLite consensus disorder prediction 76 99 - -
Bpe04g00455 1369 CDD DEXXQc_SETX 678 1060 - -
Bpe04g00455 1369 Pfam AAA domain 684 1030 IPR041677 GO:0004386
Bpe04g00455 1369 MobiDBLite consensus disorder prediction 232 403 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00455 - - K10706 qsu:112038045 2065.43
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00097 Bpe04g00455 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00455 Bpe-Chr4:2914149 Bpe08g00863 Bpe-Chr8:10981753 2.15E-43 dispersed
Bpe06g00827 Bpe-Chr6:18456337 Bpe04g00455 Bpe-Chr4:2914149 4.00E-88 transposed
Bpe11g01611 Bpe-Chr11:12234297 Bpe04g00455 Bpe-Chr4:2914149 1.79E-45 transposed
Bpe11g01731 Bpe-Chr11:13667940 Bpe04g00455 Bpe-Chr4:2914149 5.24E-53 transposed
Bpe12g00744 Bpe-Chr12:12968147 Bpe04g00455 Bpe-Chr4:2914149 4.04E-74 transposed
Bpe02g00097 Bpe-Chr2:712902 Bpe04g00455 Bpe-Chr4:2914149 6.36E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g383 . Blo12g00698 . Bda03g00500 Bpe02g00097 Bpe04g00455 . Bma01g02622 . . Cma01g01416 . . . . Cpe06g00511 . . . . . . . . . . . . . . . Cone4ag1352 Cone7ag1580 . . . Csa04g01843 . . . . . . . . . . Sed06g0283 Cmo01g01466 . . . . Car09g00579 . . Bhi09g02618 Tan01g3970 Cmetu10g0738 . Hepe01g2246 Mch11g0793 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006505 1 1 2 2 2 0 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00455 Bpe_Chr04 FPKM 14.041333 10.139719 14.658647 10.880007 6.460071 6.829705 7.046913 19.083155 19.028442 22.646788