Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00456 ATGAATGCAAATTTAAAGAAATCTCCTTCAAATGGTTGTGAGAATCCTGTCTCATCTGAAGAACAGCTACAGAAGATTTATGAGATTAGAAGGCTGTTAGGGCCTTTGTCAGGTAAGTTGTCTGTTTATTGTTCTGATGCATCCATTTCGAGATACCTAAGGGCCAGAAACTGGAACGTTAAGAAAGCAGCAAAAATGCTAAAAGAATCATTAAAATGGCGGTCACAGTTCAAGCCAGAAGAGATTAAATGGGAAGATGTTGCCCATGAAGCAGAGACAGGAAAAATTTACAGGACGCATTACATTGACAAACATGGGAGAACGGTTCTAGTGATGAGGCCAAGTCGTCAGAACTCAAAGAGCATAAAAGGGCAGATAAAGTATTTGGTGTATTGCATGGAGAACGCTATTTTGAATCTGGCTTCAGACCAAGAACAGATGGTCTGGCTGATTGATTTTCAAGGCTTCAATTTGTCCAATATTTCTGTGAAGGTTACACGAGAAACTGCTAATGTTTTGCAAAATCATTATCCGGAACGTCTTGGTATGGCAATACTATACAATCCACCAAAGTTCTTCGAGCCATTCTGGACGGTGGTGAAGCCATTTCTAGAACCAAAAACTGTAAACAAAGTTAAATTCGTCTACTCTGATGATCTTAACTCTCAGAAGGTGATGGAGGATCTTTTTGAGATGGAGAAGCTGGAATCTGCATTCGGGGGAACAGATCATACAGGTTTTGAGATAACCAAATATGCCGAGAGGATGAGAGAAGACGACAAAAAGATGCCTGCTTTCTGGACAGCATCAAGCCCCCCATTGTCAACCTCAGAGCAACCCATGCTTAGTACTCCTCTCGATCTAGACTCTAGCTCTGATTCTTCTGACAATGACAAAACAGATTGCGACCCATCAGATCAAATTGCACCAGAAGAAGATCTCTCCCCAGAACACGATACGATTGTCGCGATTGGCAATGGCGGAAGCAGTGGCGCTAGCTGA 1002 42.12 MNANLKKSPSNGCENPVSSEEQLQKIYEIRRLLGPLSGKLSVYCSDASISRYLRARNWNVKKAAKMLKESLKWRSQFKPEEIKWEDVAHEAETGKIYRTHYIDKHGRTVLVMRPSRQNSKSIKGQIKYLVYCMENAILNLASDQEQMVWLIDFQGFNLSNISVKVTRETANVLQNHYPERLGMAILYNPPKFFEPFWTVVKPFLEPKTVNKVKFVYSDDLNSQKVMEDLFEMEKLESAFGGTDHTGFEITKYAERMREDDKKMPAFWTASSPPLSTSEQPMLSTPLDLDSSSDSSDNDKTDCDPSDQIAPEEDLSPEHDTIVAIGNGGSSGAS 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2923732 2926084 + Bpe015143.1 Bpe04g00456 102265

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00456 333 Pfam CRAL/TRIO, N-terminal domain 45 69 IPR011074 -
Bpe04g00456 333 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 84 247 IPR001251 -
Bpe04g00456 333 SUPERFAMILY CRAL/TRIO N-terminal domain 19 86 IPR036273 -
Bpe04g00456 333 SMART CRAL_TRIO_N_2 45 70 IPR011074 -
Bpe04g00456 333 CDD SEC14 92 242 IPR001251 -
Bpe04g00456 333 Gene3D - 3 283 IPR036865 -
Bpe04g00456 333 SUPERFAMILY CRAL/TRIO domain 84 263 IPR036865 -
Bpe04g00456 333 PANTHER CRAL-TRIO LIPID BINDING DOMAIN, CRAL/TRIO DOMAIN-CONTAINING PROTEIN-RELATED 1 303 - -
Bpe04g00456 333 PANTHER GH16843P 1 303 - -
Bpe04g00456 333 MobiDBLite consensus disorder prediction 269 291 - -
Bpe04g00456 333 MobiDBLite consensus disorder prediction 265 333 - -
Bpe04g00456 333 Pfam CRAL/TRIO domain 94 241 IPR001251 -
Bpe04g00456 333 MobiDBLite consensus disorder prediction 292 318 - -
Bpe04g00456 333 SMART sec14_4 90 244 IPR001251 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00456 - - - qsu:112038091 466.463
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g01567 Bpe04g00456 CCT
Bpe02g00096 Bpe04g00456 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00456 Bpe-Chr4:2923732 Bpe13g00448 Bpe-Chr13:12006463 7.15E-94 dispersed
Bpe02g00096 Bpe-Chr2:707833 Bpe04g00456 Bpe-Chr4:2923732 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g179 . . . . Bpe02g01567 . . . . . . . . . . . . Bhi04g01135 . . . . . . . . . . . . . . . Cone17ag0954 Cone20ag0298 . . . Cme03g01722 . . Bda01g01354 . . Bpe04g00456 Bma01g00904 . . . . . . . Car05g00890 . . . . . . . . . Cla08g00979 Cam08g1428 Cec08g1006 Cco08g1129 Clacu08g1133 . Cre08g0917 Lsi08g00826 . Chy03g00649 .
Vvi8g55 . . . Bda03g00501 . . . . . . . . . . Sed03g2096 . . Bhi03g02369 Tan03g0569 Cmetu08g0790 . Hepe04g0579 . . Cla04g00493 Cam04g0482 Cec04g0595 Cco04g0647 Clacu04g0521 Cmu04g0527 Cre04g0586 . . . . . . . . . . . . Bpe04g00456 Bpe02g00096 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g381 . . . Bda03g00501 Bpe02g00096 Bpe04g00456 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1579 . . . Csa04g01845 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011765 1 3 0 0 2 0 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 1 3 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00456 Bpe_Chr04 FPKM 1.039081 1.030965 1.993787 2.75876 6.090517 6.872736 6.830647 5.01919 5.650873 4.7832