Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00465 ATGAATTTAGAAGAGTTCTTGCAAAACGTGATCGACGTTGAACGAGGAAAACTGGGCGACCAAAACCCATCATGTTCATCACCAGCTTCGCTTCTTTTAGGAAACTTCATGACAGATAAGATGTTGAACAACAGAACAGTCGAGGATATTTGGAAAGACATTCTTCATAATGACCAATCAATTTGTCAGAAATATATGGTCGGAGAAACTACGCTCGATGGTTTTCTCCTCCGAGCCGGAATCCTTGGCGCTGGAAACCAAAATAGCGACAATGATCAACCTCGATCTCTCGTGGAAGACGGTTCAAAGTTCAAAGCATTAGTAGACGCGGAATTCCAATCTCGTGATCAACAATTTTTCGAAACTCAATTTCCGATCCCTTCACCGTCGCCTGCGTTTGTTGATTCTCAGTCGGTATCGGGACGGAAGCGAGGTTTGTCCGGTGAACCGACGGAGACGACAACCGAGCGGAGGAAGAAACGGATGATTAAAAACCGAGAATCTGCTGCAAGATCAAGAGCCAGAAAGCAGGCATACACTAATCAGCTGGAGCATGAAGTGTTTGAGTTCAGGGAAATCATTGCTGGCTAA 591 45.01 MNLEEFLQNVIDVERGKLGDQNPSCSSPASLLLGNFMTDKMLNNRTVEDIWKDILHNDQSICQKYMVGETTLDGFLLRAGILGAGNQNSDNDQPRSLVEDGSKFKALVDAEFQSRDQQFFETQFPIPSPSPAFVDSQSVSGRKRGLSGEPTETTTERRKKRMIKNRESAARSRARKQAYTNQLEHEVFEFREIIAG 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2958508 2959098 - Bpe015152.1 Bpe04g00465 102274

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00465 196 SUPERFAMILY Leucine zipper domain 157 190 IPR046347 GO:0003700|GO:0006355
Bpe04g00465 196 CDD bZIP_plant_BZIP46 157 187 - -
Bpe04g00465 196 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 155 192 IPR004827 GO:0003700|GO:0006355
Bpe04g00465 196 Gene3D - 155 193 - -
Bpe04g00465 196 MobiDBLite consensus disorder prediction 124 176 - -
Bpe04g00465 196 MobiDBLite consensus disorder prediction 149 176 - -
Bpe04g00465 196 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 160 175 IPR004827 GO:0003700|GO:0006355
Bpe04g00465 196 PANTHER BZIP TRANSCRIPTION FACTOR 1 192 - -
Bpe04g00465 196 Pfam bZIP transcription factor 157 190 IPR004827 GO:0003700|GO:0006355
Bpe04g00465 196 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 1 192 IPR043452 GO:0003700|GO:0045893
Bpe04g00465 196 MobiDBLite consensus disorder prediction 124 148 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00465 K14432 ABF; ABA responsive element binding factor - zju:107422670 131.724
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00465 Bpe-Chr4:2958508 Bpe12g00055 Bpe-Chr12:423257 2.37E-11 dispersed
Bpe04g00465 Bpe-Chr4:2958508 Bpe04g01632 Bpe-Chr4:22542737 2.22E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g347 . Blo12g00693 . . . Bpe04g00465 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g00642 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003807 1 3 1 1 1 0 2 1 1 0 1 1 1 1 1 1 1 4 2 1 1 1 1 1 1 1 1 8 2 2 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21227 PF00170 bZIP_1 5.20E-10 CL0018 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00465 Bpe_Chr04 FPKM 8.539675 10.434239 12.741229 15.069151 11.254395 10.297693 11.516874 21.760193 20.869726 22.761387