Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00467 ATGGAGTTTTCCTCCACCAACTCTGTCAATGGCTTCTACTCCTTCCTCACCAGAGGAATCGATGATCTGGAACGAATTTATCTCTCCAACAGCTTCATGTCAATCCAGTTCCTTCAAAGAGCTCTCTCCCTTCTCCGATCTTTTCACTCTCAATTGACCCTTCTTGTCCAGAAGCTTCATTTGCCTGTTGGTGAGAAGTGGCTTGATGAGTATATGGACGAAAGCGCGAAGCTCTGGGAGGCTTGTTTGGTCATCAAATCTGGTATCTCTTCAATAGAGAATTACTACTCTGCTGGATCCAATATTACTTCCTCTCTCGAGAGTCATCGCCATCTCAGTCCACAGCTCTCTCGTCAGGTTATTCGGGCAATATCAGGGTGTCGCCAAGAAGCAGTGGGTTTGGAGGAGGAGAACCGTGCTTTAATGGAAGCAAGAATCCAACCACTTTCGTTGAGATTCGATGAAAAAGTCTCAATCGAATCGAAGCTTAATGGGTTCAATGGTTTCCGAGGAGTTCTTTACGCCATGAGAAACGTTAGCTCTTTGTTGCTAATGATCTTGCTAAGCGGACTAGTTTGTTTTAGGCCGGAGATGAATATTCTCCGGGGAGGGTACGAAGGGTGCCTGTTTTTTGGGTCGAGTTTTATGATCTCGACGATGAGGTTGCAGCAGAGAGTGGCGGCGGAGCTCGGCCGGATAACCGGTAGGCCGGGGATTCTTTTGTACGAGTTTCGAAGGTCTAAATTGGCCATGGATGAGCTGAGAGGAGAGCTGGAGAGGAGGCAGGGGGTCATGGAATGGGAATCAGAGGAAGCGATAAGGGAGACAGTGCAGAATCTGAGTGGGTGCTTTGAAATGTTGAGATCCGGTGCTGATAATATTGTTTCCCAGATTGATGATTTCTTTGATGAAATTGTCGAAGGAAGGAAGATGCTTTTAGACTTTTGCAGCCATAGA 957 46.81 MEFSSTNSVNGFYSFLTRGIDDLERIYLSNSFMSIQFLQRALSLLRSFHSQLTLLVQKLHLPVGEKWLDEYMDESAKLWEACLVIKSGISSIENYYSAGSNITSSLESHRHLSPQLSRQVIRAISGCRQEAVGLEEENRALMEARIQPLSLRFDEKVSIESKLNGFNGFRGVLYAMRNVSSLLLMILLSGLVCFRPEMNILRGGYEGCLFFGSSFMISTMRLQQRVAAELGRITGRPGILLYEFRRSKLAMDELRGELERRQGVMEWESEEAIRETVQNLSGCFEMLRSGADNIVSQIDDFFDEIVEGRKMLLDFCSHR 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2965614 2966678 + Bpe025625 Bpe04g00467 102276

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00467 319 PANTHER - 1 318 - -
Bpe04g00467 319 PANTHER BPS1-LIKE PROTEIN 1 318 - -
Bpe04g00467 319 Coils Coil 124 144 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00467 - - - zju:107422638 533.102
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g01610 Bpe04g00467 CCT
Bpe02g00086 Bpe04g00467 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00467 Bpe-Chr4:2965614 Bpe14g00349 Bpe-Chr14:3347183 8.67E-176 dispersed
Bpe02g01610 Bpe-Chr2:18987704 Bpe04g00467 Bpe-Chr4:2965614 7.81E-168 wgd
Bpe02g00086 Bpe-Chr2:654121 Bpe04g00467 Bpe-Chr4:2965614 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g341 . Blo12g00692 . Bda03g00511 Bpe02g00086 Bpe04g00467 . Bma01g02632 Cmo05g00502 . . . . . Sed04g0056 . Cpe07g00117 Bhi04g00715 Tan02g2354 Cmetu03g0634 . Hepe10g0527 . . Cla08g01085 Cam08g1537 Cec08g1111 Cco08g1238 Clacu08g1240 . Cre08g1021 Cone4ag1364 Cone7ag1567 . . . . . Cme03g01497 . . Bda11g00753 . Bpe02g01610 . . Bma02g00148 . . . Cma12g00138 Cma05g00479 Car05g00427 . Cpe11g00419 . . . . . . . . . . . . . . . Lsi08g00942 . Chy03g01008 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003079 3 1 4 5 4 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 2 1 1 1 1 2 1 2 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00467 Bpe_Chr04 FPKM 28.783783 23.406822 29.076035 32.598568 36.492458 25.471319 30.655409 44.089302 54.934578 53.294434