Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00476 ATGGACAGGGAGGATAACCTTCCAGAACCACCTGCTGTGACGAACAGTCTATTTCGTCCTGTCGTCCCGGAAACTACTTCTTCTTCTTCTTCTTCTTCCTCCTTTTCTTCATCCTCTCCGCCAGGATTCCTCCGTCAAGTGCAAGCCGCCTTCAAGCGGCATCGCCCTCAAGGTGCAATGCAGTCAAACAGTTTTAGGCCTAGACGAATGATCCTTCCTCAAAGGGAAGCGCCAAGCAGTTCCCTTTTTCAGCCTGCAGTTGTGGAAGAGGCAAAAAAGCCTCAAGATGTTTTGTTTAATCAGGGTCATGTAATGAATAATCTTAGTGCAGAAACAAAGACTACTGTAGTTGTTGTTAGGGAAACCCAAGAAGATACTACAGATACGTCGCCCATGCTTTTAGGCACTATGATCACTGACAAAAGTTTCAAACCCATCAATGCTCATAAAGAGGGGCCAAAATTGCTTACCAGTTGTTCAGGCGGCAATTTAACTCTACAGCATGAAGTATCTCAGCTAGTTGACGCTCAGAAAAAGGTTCAATTATCAATGGATAATGGGAGTTTAAATCAAGGAAAGAATCCAAAATCAATGATAAAGACGGAAGGAGAGGCCTCCTGTATCCTCATAAATCATGAATCCAAGCTCCATAATTGTCAGAAGGCACAAATTAATAAGAATTTGGGATCTGATAGTGGAATTTCTTTGATGGTGAAGAGCGAACAGACTGATCCAGATCAACTGTCCCATTTCAAAAGTTTTTTGAGCCAACCTGTGACTCAATCGTCAGTGGCTGGGCTGTCTTGTGCGACCACAACATCTATTTACTCAACTTCAGCACCTTTGCATTATGCGACAACCTGTTGCTCTCATTTACAGAAAGATAACAATTCTCATGGTGCACTGGAAGCAGCTACCTTTGACGTGAATCGTCGACCTCTAGCTCAAGGGATTGTGACATTGCCATCAAATGCCTCTACAAATAACAGCTCAAATTTTGTTATTAATGAGTCATGCACGTCTTCTCTGGTCCCTGATTCTTCTATTAAAACCCAAATAAAAGCCAAGGAAGATGATATTTCTAAAGAGCAAGAAAGCATAGTTCCTAAACAAACAAGCATTTTGAAAGAGGCCCATCTTCCCCATGATAAGCTAAATGAAAGAAGTGGTGGTTATGACAGTAACAATATACGTCCTCCCCAAAACTTGAATATTGCTGTGAAGGTGGATCCTTCCAAGACAGAAAAGCAAGAAAAGGCTGCAAGTAGCAAAGGTGCTACGATGGCAAGTAAAAAGAATTATGATCCAGATTTGTTCTTTAAAGTAAATGGAAAGCTTTATCAAAGGCTTGGAAAGATAGGAAGTGGAGGAAGCAGTGAGGTTCACAAAGTAATTTCATCGGACTGTACCATCTATGCACTTAAAAAAATCAAGCTCAAAGGTCGTGATTATGCCACTGCTTATGGCTTTTGCCAGGAGATTGTGTATTTAAGTAAATTGAAAGGGAAGAACAATATCATACAACTCATAGATTATGAGGTTACAGATAAAATGCTGCTTCGGGAAGTTATGGATGGCTCCATGAGTCATAAAGAGGCTAAGGTCAAAGATGATGGGTACATATTTATGGTACTTGAATATGGGGAAATCGACTTGGCTAACATGCTGTCACAAAAATGGAAAGAAATGGATGGCTCTAGTCAGACAATAGATGAGAACTGGCTTCGGTTCTATTGGCAGCAAATTCTTCTTGCTGTGAATACAATCCACGAGGAACGAATTGTGCACTCTGACCTCAAACCAGCTAACTTCCTTCTCGTCAAGGGTTCCTTGAAGCTAATTGACTTCGGGATTGCGAAAGCCATAATGAGTGATACTACCAATATCCAAAGGGAATCTCAGGTGGGTACACTTAGTTACATGTCTCCAGAGGCGTTTATGTGCAACGAGAGTGATTCTAGTGGAAACATGATCAAATGTGGTCGTCCGTCAGATATTTGGTCTCTTGGCTGCATTCTTTATCAGATGGTATATGGAAAGACCCCCTTCTCAGAGTATAAAACATTCTGGGCCAAGTTCAAAGTTATTACAGATCCAAATCATCGTATTATTTACGGACCACTTTACAATTCTCGCCTTCTCGATCTTATGAAGAAATGTCTTGCGTGGGACCGAAATGAGAGGTGGCGAATTCCTCAGTTACTTCAACACCCTTTTCTCATACCTCCAGTTCCACCACAGCTAGCTTTGTCTCAGAATCAAAGCTCTACACTGCTTCAACTTATTGCAGAAACTTGTACAAATGACCCTCAAGCTTCTTTCTTGCTCTTCTCTCAGCTTCAACAACTACTTACGGATCCAGTGAGACCAATGACATCTCTCTTGATCACATCAACTGAAAATCAATTCGATCTTTTCCCACAAATATCAAATACTTACCTCCAGCTTCAGCAACAATCTGCTGACTCAAAGAGATGA 2478 41.36 MDREDNLPEPPAVTNSLFRPVVPETTSSSSSSSSFSSSSPPGFLRQVQAAFKRHRPQGAMQSNSFRPRRMILPQREAPSSSLFQPAVVEEAKKPQDVLFNQGHVMNNLSAETKTTVVVVRETQEDTTDTSPMLLGTMITDKSFKPINAHKEGPKLLTSCSGGNLTLQHEVSQLVDAQKKVQLSMDNGSLNQGKNPKSMIKTEGEASCILINHESKLHNCQKAQINKNLGSDSGISLMVKSEQTDPDQLSHFKSFLSQPVTQSSVAGLSCATTTSIYSTSAPLHYATTCCSHLQKDNNSHGALEAATFDVNRRPLAQGIVTLPSNASTNNSSNFVINESCTSSLVPDSSIKTQIKAKEDDISKEQESIVPKQTSILKEAHLPHDKLNERSGGYDSNNIRPPQNLNIAVKVDPSKTEKQEKAASSKGATMASKKNYDPDLFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCTIYALKKIKLKGRDYATAYGFCQEIVYLSKLKGKNNIIQLIDYEVTDKMLLREVMDGSMSHKEAKVKDDGYIFMVLEYGEIDLANMLSQKWKEMDGSSQTIDENWLRFYWQQILLAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRESQVGTLSYMSPEAFMCNESDSSGNMIKCGRPSDIWSLGCILYQMVYGKTPFSEYKTFWAKFKVITDPNHRIIYGPLYNSRLLDLMKKCLAWDRNERWRIPQLLQHPFLIPPVPPQLALSQNQSSTLLQLIAETCTNDPQASFLLFSQLQQLLTDPVRPMTSLLITSTENQFDLFPQISNTYLQLQQQSADSKR 825
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3007360 3011801 - Bpe015162.1 Bpe04g00476 102285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00476 825 PANTHER MIXED LINEAGE PROTEIN KINASE 27 791 - -
Bpe04g00476 825 Pfam Protein kinase domain 447 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe04g00476 825 MobiDBLite consensus disorder prediction 1 41 - -
Bpe04g00476 825 SMART serkin_6 447 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe04g00476 825 ProSitePatterns Protein kinases ATP-binding region signature. 453 475 IPR017441 GO:0005524
Bpe04g00476 825 MobiDBLite consensus disorder prediction 19 41 - -
Bpe04g00476 825 Gene3D Phosphorylase Kinase; domain 1 440 527 - -
Bpe04g00476 825 PANTHER DUAL SPECIFICITY PROTEIN KINASE TTK 27 791 IPR027084 GO:0004712|GO:0007093|GO:0051304
Bpe04g00476 825 ProSiteProfiles Protein kinase domain profile. 447 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe04g00476 825 Gene3D Transferase(Phosphotransferase) domain 1 561 742 - -
Bpe04g00476 825 CDD PKc_Mps1 445 740 - -
Bpe04g00476 825 SUPERFAMILY Protein kinase-like (PK-like) 439 761 IPR011009 -
Bpe04g00476 825 ProSitePatterns Serine/Threonine protein kinases active-site signature. 594 606 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00476 K08866 TTK, MPS1; serine/threonine-protein kinase TTK/MPS1 [EC:2.7.12.1] - qsu:111990938 898.656
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe04g00476 Bpe14g00372 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00476 Bpe-Chr4:3007360 Bpe12g00747 Bpe-Chr12:12984004 5.81E-23 dispersed
Bpe14g00372 Bpe-Chr14:3528628 Bpe04g00476 Bpe-Chr4:3007360 0 transposed
Bpe02g00081 Bpe-Chr2:608986 Bpe04g00476 Bpe-Chr4:3007360 3.36E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g316 . . . Bda03g00522 . Bpe04g00476 . . Cmo04g02447 Cmo15g00716 . . . . . . . . . . . . . . . . . . . . . Cone4ag1378 Cone7ag1553 . Cone20ag0460 . . . . Blo17g00188 . . Bda13g01492 . Bpe14g00372 . Bma02g00233 . . . . . Car04g02260 Car15g00648 Cpe01g02029 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003876 2 3 2 4 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63289 PF00069 Pkinase 5.40E-54 CL0016 Bpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00476 Bpe_Chr04 FPKM 13.788089 16.565586 3.595117 3.503547 118.945381 118.155365 130.25882 3.252771 3.486432 2.980731