Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00479 ATGGATCAAGTGAATCATGATTTTGTTTTGCGGCGAGTTGAATCATGTTCTCAAACAAGCAGTGCAGGCTCGTCGAATCGCAACCGTTCGTTTAATCTGCCGGGTGCTTCCTTTTCCCAAATCAACAACGATGGTGAAAGCGATTGTGTTTCCGAAGCTGGAGATATTGGAGATAAGGCTCTTAGCATGAACAGGCTCAGTGATTATGGGTCAATGAGAGAAAATGGAGTGGTTGTTCCTATTGTGGAAGATAACTTTCTTCAATCTTATGGGTCAAATGCTATCAAAGATGCAGTTTCTCCTTCTTCCCCACTACACGAGGAAATCGCAGCTTCTATTTCAAGAAATCAAGCAAATTGCTTTGTCGAAAACAAGCACGTAAATAAAAGAGATTTTTCGAAGTTTGTGGAGTATATTTCATGCCTCCTTCATTTGGCTGTCTTTGGGATTCTTGGGGTTTTAACGAGATATTTACTCCAAACAGTGTTTGGCCCAAAAGTTGCTGGTGTCACAAGTGATCAAAGCCTTTTGTATCTTGATCTTCCTTCCAACATGGTTGGGTCATTTTTAATGGGATGGTTTGGAGTTGTTTTCAAAGCCAATATATCAAGAGTCTCGGAATATCTGGCTATTGGACTGAGCACTGGCTACTTAGGAAGCCTTACAACTTTTAGTGGCTGGAATCAGAAAATGCTCGATCTCAGCATCGATGGGCATTATGTATCTTCCCTACTCGGGTTTCTGTTAGGATTGTTTCTTGTAGCATATTCAATAATTTTTGGAATCGAGACAGCCAAAGGCTTCAAGTGGCTTTGTAAAACAAAGAATTTAAGCATTATCTCTGGCATCAACTGGAGAGTAAACACTTACAAGCGTCACATAGCCTCTATAGTAGTACTGGTAATGATGTTGGGTTTCTTATGGAGCATTAGTGGAGTATTTGCTCAGCGGGAGTTCAACACGGATAGCAATGGAGCGCAGCTATGGCTGGCTTGCCTGGTCGGACCGCCTGGAGTGTGGGCCAGATGGTTCTTGGCTCGACTCAACGGACGTGGATTAGGAAGAGACAGGGTGCTAAGATGGGTGCCTTTCGGGACCTTAATTGCTAATTTGGGTGCAGCTTGTATCATGGCAGCTCTATCGACTGTGAAGAAAGTGGTAAAGACAAAGACGTGCGAAATAGTGGCCTCGAGCATTCAGTTCGGAACTTTGGGGTGTTTGAGCACGGTCTCGACATTCATTGCTGAGTTTAACGCGATGAGAGAAAGTAATGAGCCATGGAGGTCGTATGCATATGCGGCAGCAACCATATTTTTGTCGTTCGGCCTGGGGATTTTAATCTACTCCGTGCCTGTTTGGGCGTTAGGACTCGAATAG 1377 43.86 MDQVNHDFVLRRVESCSQTSSAGSSNRNRSFNLPGASFSQINNDGESDCVSEAGDIGDKALSMNRLSDYGSMRENGVVVPIVEDNFLQSYGSNAIKDAVSPSSPLHEEIAASISRNQANCFVENKHVNKRDFSKFVEYISCLLHLAVFGILGVLTRYLLQTVFGPKVAGVTSDQSLLYLDLPSNMVGSFLMGWFGVVFKANISRVSEYLAIGLSTGYLGSLTTFSGWNQKMLDLSIDGHYVSSLLGFLLGLFLVAYSIIFGIETAKGFKWLCKTKNLSIISGINWRVNTYKRHIASIVVLVMMLGFLWSISGVFAQREFNTDSNGAQLWLACLVGPPGVWARWFLARLNGRGLGRDRVLRWVPFGTLIANLGAACIMAALSTVKKVVKTKTCEIVASSIQFGTLGCLSTVSTFIAEFNAMRESNEPWRSYAYAAATIFLSFGLGILIYSVPVWALGLE 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3022363 3024879 + Bpe025627 Bpe04g00479 102288

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00479 458 Pfam CrcB-like protein, Camphor Resistance (CrcB) 330 446 IPR003691 GO:0016021
Bpe04g00479 458 Pfam CrcB-like protein, Camphor Resistance (CrcB) 144 256 IPR003691 GO:0016021
Bpe04g00479 458 PANTHER BNAC04G47810D PROTEIN 15 457 - -
Bpe04g00479 458 PANTHER FLUORIDE EXPORT PROTEIN 1-RELATED 15 457 IPR003691 GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00479 K06199 crcB, FEX; fluoride exporter - pvy:116110552 546.969
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00001 Bpe-Chr3:7741 Bpe04g00479 Bpe-Chr4:3022363 2.10E-29 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g307 . Blo12g00681 . Bda03g00525 . Bpe04g00479 . . Cmo04g02455 . . . . . . . . . . . . . . . . . . . . . . Cone4ag1382 Cone7ag1549 . . . . . . . . . . . . . . . . . . . Car04g02273 . Cpe01g02035 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007714 1 3 1 2 2 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 0 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00479 Bpe_Chr04 FPKM 6.048117 6.400833 29.513824 30.39727 17.151012 14.57704 16.018209 56.880951 63.003395 54.574387